Detail information of orai.001G007600_circ_g.3


General Information
CircRNA Name orai.001G007600_circ_g.3
ID in PlantcircBase gra_circ_000005
Alias Chr01:694054|696609
Organism Gossypium raimondii
Position chrChr01: 694054-696609  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.001G007600
Parent gene annotation NA
Parent gene strand +
Alternative splicing orai.001G007600_circ_g.2
Support reads 90/159
Tissues leaf/ovule
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Gorai.001G007600.3:8
Gorai.001G007600.1:8
Gorai.001G007600.4:8
Gorai.001G007600.6:3
Gorai.001G007600.2:8
Gorai.001G007600.5:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGTTATCTAGTGAGAGAACATTTACAATTTGTGGGATGGCAGACTCTTTAGCACCAGAGGT
AATTCAGGGAAAGGGCCATGGTCTTCCTGCTGACTGgaagataaaaatggagcggtgccaaggg
ttctgcaacggtatacagctgataagttgtcatcgtttggggagctggcactgatgtatgtttt
cttctctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1253
Transcript exons: 694054-694136,694509-694740,694834-695150,695373-695460,
695558-695624,695901-696178,696261-696326,696488-696609
GAAGATAAAAATGGAGCGGTGCCAAGGGTTCTGCAACGGTATACAGCTGATAAGTTGTCATCGT
TTGGGGAGCTGGCACTGATGTACAATAAGCCTCTCCAAGCCTCTGTGCTTGCTGTGACAAGTGG
AACTCTCTGGGCTTTGAAACGAGAAGATTTTCGTGGAATTTTGATGTCTGAATTTTCTAATTTG
TCATCCTTGAAGTTGCTCCGCTCCGTCAATCTTCTATCAAGGTTAACAATTTTACAGCTGAGTC
ATGTTGCAGATTCTCTTTTCGAAGTTTCCTTCTCTAATGGGCAGACCATATTTAATAAGAATGA
AGGCCTCTCAGCATTGCACATTATCCAGAAGGGCCAAGTGAGGATTACTTTTGACAGGGATTTG
TTAAGCAGCCCAAATGTCTGCAGTCTCAAGTCTGATAACCCCAACGAGGATGATGATCAACAGA
CGGGGAAAGACCTGTCTGTTGAAAAGACAGAAGGAAGCTATTTTGGGGAATGGACGCTTCTTGG
TGAGCAGATGGGTTCTTTAACTGCAGTTGCAGTGGGTGATGTCATGTGTGCTGTTTTGACGAAG
GAGAAGTTTGATTCAGTTGTGGGTCCTTTGACAAAGCTTTCCCAGGATGATCAGAAGATTAGAG
ATTATCCTCTAGATGCGACCAAGGATTCTTCCAAAGAAATTGATATTTCAAGTCTTGCTAAAGT
TAGCTTCACTCAGTTGGAGTGGAGAACAAGTTTATATTCCACTGACTGTAGTGAGATTGGGCTT
GTACTTGTAAGAGACTCAGAAAAAATCCTTAGTTTGAAGAGGTTTTCAAAGCAGAAGGTAAAAA
AACTAGGAAAAGAAGCCCAAGTTTTAAAGGAGAAGGATCTGATGAAGAGCATGAGCTCTGCAGT
TTGCATGCCGGAGATTTTGTGCACTTGTGCTGATCAAATGCATGCTGGAATTTTATTGAATACC
TACCTTGTCTGCCCTTTGGCTTCTATACTTCACACTCCTCTAGATGAACAATCAGCACGGTTCT
GTGCTGCATCTGTTGTTACTGCTTTAGAAGATCTACACGAGAATGGTGTCCTTTACAGAGGAGT
CTCTCCGGATGTTTTAATGTTGAACAAAACAGGCCATTTACAGCTTGTCGATTTCAGATTTGGG
AAGAAGTTATCTAGTGAGAGAACATTTACAATTTGTGGGATGGCAGACTCTTTAGCACCAGAGG
TAATTCAGGGAAAGGGCCATGGTCTTCCTGCTGACTG

Genomic sequence GAAGATAAAAATGGAGCGGTGCCAAGGGTTCTGCAACGGTATACAGCTGATAAGTTGTCATCGT
TTGGGGAGCTGGCACTGATGTATGTTTTCTTCTCTTCTCCTTTCTCACCTCATAGTAAATGAAG
AACTCTCTAATATATTTTTTGAAGTTGACATTGTTTTGCTTAGTAAAAATTGAAATGCACATTT
GGAAAGCTTATTGAGAATTTCTACGGAGTAGCAAACCAAAATTAGGTTAACATGTTACCAACAT
TTATTTGGAGTAGTAACAAAGCAAAAATCCACCCAATTTTCTTAACACCTACGACCTATCAATC
ACTATTTTGGTGCATTTTTAGTTTTCACATGTGGTGTGTGTGAAACCTGCTGGTTTCTTGAATT
AGGGTTATTTTACTTTTCTGGCTAATGTGTTGTACTACTTACCTTGATAATTTGTTTTTATCGG
TATACAGGTACAATAAGCCTCTCCAAGCCTCTGTGCTTGCTGTGACAAGTGGAACTCTCTGGGC
TTTGAAACGAGAAGATTTTCGTGGAATTTTGATGTCTGAATTTTCTAATTTGTCATCCTTGAAG
TTGCTCCGCTCCGTCAATCTTCTATCAAGGTTAACAATTTTACAGCTGAGTCATGTTGCAGATT
CTCTTTTCGAAGTTTCCTTCTCTAATGGGCAGACCATATTTAATAAGGTAGAAGTTTTCCTTCC
AATGTTATATTTCATTTTCTGTGTATTATTTTTGGTTCATATTCTTATTTTGTATATTTCTCTT
GCATATCTGCAGAATGAAGGCCTCTCAGCATTGCACATTATCCAGAAGGGCCAAGTGAGGATTA
CTTTTGACAGGGATTTGTTAAGCAGCCCAAATGTCTGCAGTCTCAAGTCTGATAACCCCAACGA
GGATGATGATCAACAGACGGGGAAAGACCTGTCTGTTGAAAAGACAGAAGGAAGCTATTTTGGG
GAATGGACGCTTCTTGGTGAGCAGATGGGTTCTTTAACTGCAGTTGCAGTGGGTGATGTCATGT
GTGCTGTTTTGACGAAGGAGAAGTTTGATTCAGTTGTGGGTCCTTTGACAAAGCTTTCCCAGGA
TGATCAGAAGTATGTCTTAGTCTAATGCACTGAATGCTGCATCTTTGTTTTCCTCCTTTTTTCT
GTTAGAATGCGTTTCATTTTATATTTCACATAAACCTTCCATTTTAGAATCTGTAAGCTTTTAG
AATTCTCTAACTGAACAACAATGAACTTTTTATTCCTTCTCTTCTCATTTGAATGTTTAATACT
TTGTTTGAGAATGATATTGTTGTCTTCATTGCCATTTAGGATTAGAGATTATCCTCTAGATGCG
ACCAAGGATTCTTCCAAAGAAATTGATATTTCAAGTCTTGCTAAAGTTAGCTTCACTCAGTTGG
TAAGAAGTGCTTAGTTCTACCTCTGCCTTGTGGCTAATGTAGCAAAATGTGATCATCAAGAGAA
CAAATCCTAAACTCTGCTAATGGCATATGCAGGAGTGGAGAACAAGTTTATATTCCACTGACTG
TAGTGAGATTGGGCTTGTACTTGTAAGAGACTCAGGTTGGTTATATCTGTGTATTTACTTTTCC
TCTCATTTTAAATTAAAAAAAGACGCCTTTTCTTGTGTAACAAGTTTAGGCTCAACAGTTAACT
GACATGCGATATGTAGACTGATTATGCATGCTTATATTAACTGACCAAGGCATGTCAGTTGCAT
TATGGGAGTATAGGAAAATAAGCATGTTAGGTGCTATCTGCTATGTTGTGTTTTTAAGGAACTT
GTTATGGAACAACTGATAAATATTTTTTTTTGGGGCGAAATGGATTGATTACCAGAAAAAATCC
TTAGTTTGAAGAGGTTTTCAAAGCAGAAGGTAAAAAAACTAGGAAAAGAAGCCCAAGTTTTAAA
GGAGAAGGATCTGATGAAGAGCATGAGCTCTGCAGTTTGCATGCCGGAGATTTTGTGCACTTGT
GCTGATCAAATGCATGCTGGAATTTTATTGAATACCTACCTTGTCTGCCCTTTGGCTTCTATAC
TTCACACTCCTCTAGATGAACAATCAGCACGGTTCTGTGCTGCATCTGTTGTTACTGCTTTAGA
AGATCTACACGAGGTGATTTTCTAGCAGCAATTCCTTGTGTATCTGTAATTTATTTTAGTTTGT
CGTTAACACCCACATTTCATTTGGATTTCAGAATGGTGTCCTTTACAGAGGAGTCTCTCCGGAT
GTTTTAATGTTGAACAAAACAGGCCATTTACAGGTTGGTACTATTGTATGCTGTGTTATAGTTT
GTGCTGACTTTTATCTTTAAATTACTATTAAGTTTACACATAATCAAAGGTCTCCCTTCTCTTT
TACATATGAAGGGTGGCAAATCACGAGCTAAGCTTAGTTATTTTATTTTGTTATGTTGCATTGC
AGCTTGTCGATTTCAGATTTGGGAAGAAGTTATCTAGTGAGAGAACATTTACAATTTGTGGGAT
GGCAGACTCTTTAGCACCAGAGGTAATTCAGGGAAAGGGCCATGGTCTTCCTGCTGACTG
Conservation Information
Conserved circRNAs gar_circ_000002*
PMCS 1.021400662
Functional Information
Coding potential Y
Potential coding position 694135-694132(+)
694115-696562(-)
Potential amino acid sequence MYNKPLQASVLAVTSGTLWALKREDFRGILMSEFSNLSSLKLLRSVNLLSRLTILQLSHVADSL
FEVSFSNGQTIFNKNEGLSALHIIQKGQVRITFDRDLLSSPNVCSLKSDNPNEDDDQQTGKDLS
VEKTEGSYFGEWTLLGEQMGSLTAVAVGDVMCAVLTKEKFDSVVGPLTKLSQDDQKIRDYPLDA
TKDSSKEIDISSLAKVSFTQLEWRTSLYSTDCSEIGLVLVRDSEKILSLKRFSKQKVKKLGKEA
QVLKEKDLMKSMSSAVCMPEILCTCADQMHAGILLNTYLVCPLASILHTPLDEQSARFCAASVV
TALEDLHENGVLYRGVSPDVLMLNKTGHLQLVDFRFGKKLSSERTFTICGMADSLAPEVIQGKG
HGLPADWKIKMERCQGFCNGIQLISCHRLGSWH*(+)
MTTYQLYTVAEPLAPLHFYLPVSRKTMALSLNYLWC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b