Detail information of BGIOSGA030393_circ_g.1


General Information
CircRNA Name BGIOSGA030393_circ_g.1
ID in PlantcircBase osi_circ_018833
Alias Chr09:5116851_5120514(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 4322488-4326152  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA030393
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA030393_circ_g.2 BGIOSGA030393_circ_g.3 BGIOSGA030393_circ_g.4 BGIOSGA030393_circ_g.5 BGIOSGA030393_circ_g.6 BGIOSGA030393_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA030393-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCGATCTTCTGGTTTGTCATCCACTGTGGTACCTTCTGGTAGTAGGCCATCTTCAAGCTGCA
GTAGTCGTGCACAGCAGTTGAGCAGTGTACAGAAAGggtacattccatgaggtcagaagaaaga
gagacaagaaaaaggaggcaagtatcatatcctcccctctcccttgcttctgttgctttttctt
tatcttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTACATTCCATGAGGTCAGAAGAAAGAGAGACAAGAAAAAGGAGGCAAGTATCATATCCTCCC
CTCTCCCTTGCTTCTGTTGCTTTTTCTTTATCTTTATTTCATAAAGTTAAGTACTGGTGCAAAT
TATGTGTGAATTCAAAAATTAGATTTCATGTGAGAACATGTGGCCTGGTCCCAGTTAAATCAAT
GGCACATGAATGATGTTTTCCAACTTTGTGATCTTTGCAATGTACCCAAGCACTTACTTTTTTT
TTTTTTTTCAAAATTAGACCTGCTATAGATATGTAAGTTCCAAATGGGTGGTCAGACTTGTGTT
AGGTATATCTGGTCAGACACATTAGGTTGAGTCATATGCAAATGTAATTGATGTGCAAAGCTAT
GAGATGGAAACACCGTTAGAAGATGTTCAAGTGATATGACATGCTGGTGATGATAAAAGTTAGT
TTGAGATCAGTATCAAATCGGCCAGCAGGACATGATTTGCAGGATACATACATCATATATTGAA
CATGTCAGAAAAAAACGAATACATATATGCTAATGATTGGCAACATGATATTTGTTAGACTACA
AATTTGACACAACTAATTCTACCTAAGCTTTGGATATGGTTGAAAGAGTCTCCATAGCAATGTT
GTTCAACGCAAATTTTTCTTATCATGTTGAATCTTTCTGTTCTTGTTCTCCTGATATGCATTCT
GATTCTGACTTTCTTTTATTCTTGAGAAAGGAATCCTAAAATCTCGTCCCCTCTTTAAATACAT
TATTAATCAGTTATATTGGTTCATTGCCAATTCTAATTGCCACAATTATAGAATGCCATATAAT
CAATTGGGACATTTTTGTTTAAGTAACTTTCTGTTCTAAAGTGCCTGAATGTGTATTTTCCTGC
TTTCTTGTATAGAGTGCCAAAGAATCTGCCGATGCTCGATGGAGGCCTGGGATGCAGGGGCGAG
GTGGAAAAGGTGGATGGGGAAACTCTTCACGCCAGCTATCCAACTCCTCTGGTATGCATGGCAT
CTGTCTTCAAAAATGGAAGTGCTCTATCAAACCTATACTACATGTGGCATCCGTGTTGTGATAC
ACTATGAGCAGCTCATGTTGCATTCTTGTAATCTTGTTTAATTTAAAGAGTGGTTTCTCTTTGA
TATCTGATGGATTTTGTAATATGTAGAACTGCCTGCTCATTATATGAATGTTACTGCCATTTGA
TTTTCTCCAACTTCTCAAATGCATGAGTAGATATAAGAGCTTAGTATATTGAATCAACGGGGGT
TAAGTATCCTCTTGACATTTATAGCCACATGTTTTGTACCCACTTCAAGAGTAGCCTTTTAGTG
AAACTTTATAACCATTTCATGTTTTATTCTGTGATACTTCAGACATAACTGGGAGAAATGCTCC
TGCTGAAAAGGAAATTGGAGTGAATCCAAACATGGACAAATGTAACAGCTCTGTACCTGTCAAT
CCAAACACAGACACCAAGACGTCTACTTCGATCTCAAGGTATTTATAGTGCAAAAGATCTTCAG
TCACATGATTATTGTTTTTACTAAATCCTGTTAACCTTGAGTCCCCTTTTTTTTTGGTATTTAC
ATGCTGGTAAGGTATTTTTTTATTACTCATATTGGAAAGGATGTTAATTGGCCGGAGTTATTTG
TTAATTGATTTTTATTCTTATTTGGATGTGGATTGTAGATGTTTTTCTTGACAAGATCATGTTT
CTGCTTTACACTCCCATTTTTGGCTGGGTTCTTTGAGTGAAACCCATACCAAACTGTACTGCTA
GTAGTATCTTTGTTGTGTATGTTCAGAAGCACTGTTTGTAGGTTACTTTCATGTGCTTTCTTGA
AACATACATGTATTTTCTGGATTCCAACGAAAAAGTAGAACATATGTGTGTATCTGTTTATTCT
TAAAACAGTGTGCCATGTGTAGTGTAGATTTATGTTATTCAGCTGCAGCAGAACATCAGTACGA
TGCTGTTCTTTTTTTCTTTTGGGAGGAATGATTAAGGAGCTGTAGTTTTGTGTCCTAGTATATG
ATTATGTTAGAAAATTGTAAAATTCTAAGAGGAATAGACCACCTAAATTTATGAATTGCTAGTT
TTCTACATTGTATTCCAGTGGAGAGTATTTAGAGCAGGTACAATAGCAGGCTATAAGCCAGCTA
TAAACATATTTTAAAGAGATAAAGGAAAAGAGAGAAGAGTAGCAGGCTACAGATCTGCAGCCAG
CTGCAGCACGGACTCCAAGGCATAATGTGTGTATGACAGGTGGGACCAGCTATTAATAGTATAG
TAAGCAACTATTGTATGAAATAGCTATTACATTGGCTATAGATGATTTGGAGCTAGTAGTGGGC
TATACTATTAAACTTGCTCTTATATTTCTTTTATTCTGATCTGGAGCATAGTGCAAAAAACCGG
ACCGGTGAGTAACCCGGACGATGCCTCGGTTCACCGGTCCGACGGTCTGACCGGTGAACCGCCG
GTTGAACCGCGGTTCAATAAGTTATTATATATAACATGTATATCTCTAAAACAAAACGAAGCAA
AGGTGGGATGGTTAGACCTACTCACTCTCAATGCGCATACCCAGGTTCGAATCCCCATTCCACC
ACCCTTTTCTATGCATTTTGTCAAAAAAACAGTCACGTGGGCCTGTAGGGCATGGACTGGGCCT
TAACGTGGCCCATTAAACTCCTTAACTCCTTTGTCCGGTCCAACTGAGCCGGTTTAATGGCCGG
TTTAGTCAAAACCCGCCCGGTTCAGCCGGTTCAATCCGGGTCGAATGCATGTCTGGTCTTTCAG
TTGAACCGAACCGTGGAGGCCTCTGGTTCCGGTTTTTTCCGGTCGAACCGCCGGCCCGGTCCGG
TTTTTTCCACTATGATCTGGAGTTTAACCAGAATTTGTGGCTTGATGTAAATATTTTTTTTTTT
TACCGATGCTGTTTGACTGCATAGCCATTCTTCATTTACAACTTAGTTTCTTTGATTTACATTG
TTTGATGGTTTCTTGGATCATTTGGTATTTGGAGTTTGCCAAATGGATAAAACATTGAGGTCCA
CTTATTTCAGTATTAGCTTATCCAATTAAAATGCACCTGTTTGGACATGCAACTGACTTCTTTA
CCAGTTTGTCAGTTGGCCAATCCAATGGTTCATCAGAGCCTGTTGCTTCCATGGAGAAAAGTTC
TCTTGCTATAGGTCAGTTGCAGATTTCAGATTCAAAAGGAATATCTGATTTGGAAGGTAATCCA
GAAAAGCTTGTCAATGGCTTAGGTCCAGATGTAAGACTATCTTTAATACAGTCAGCACCATCTA
TATCAGGGGAGTGCATACCAGCTTTGGACCCAGTGCTTACACCAGCCCCTGAAGTCCACGGCCA
CGGTGAGACTGTTTCCACCAAACATGCTTATGCAAGTCAGTTGGCAGCAGGAGAAAAGGTGGTT
TCTAATGATGTATCAACGGCTTCACAAGGTACAATATTTGAGTTGGGAGTCTTGGGACTCTTTG
GTTAGTGTTGTCATGTTTTTAACACCTTTTCATACTCTAGGCACATCTCGATCTTCTGGTTTGT
CATCCACTGTGGTACCTTCTGGTAGTAGGCCATCTTCAAGCTGCAGTAGTCGTGCACAGCAGTT
GAGCAGTGTACAGAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021