Plant Circular RNA Database

Detail information of Os05g0207700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0207700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_026976
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 6667386-6668621  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0207700						
					
						Parent gene annotation
						
							Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (A
vrPphB susceptible protein 1). (Os05t0207700-01);Similar to Seri
ne/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB suscepti
ble protein 1). (Os05t0207700-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0207700-01:3
Os05t0207700-02:3

General Information
CircRNA Name	Os05g0207700_circ_g.1
ID in PlantcircBase	osa_circ_026976
Alias	NA
Organism	Oryza sativa
Position	chr5: 6667386-6668621 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0207700
Parent gene annotation	Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (A vrPphB susceptible protein 1). (Os05t0207700-01);Similar to Seri ne/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB suscepti ble protein 1). (Os05t0207700-02)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0207700-01:3 Os05t0207700-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGATTAACACGCTCGTGAAGATATTCCAGACCTTTTGCTGCTTCAAGAGCTATTCTCATTCTAG
TAGGCCAGTCCAATTTTGAGATACCACCACAGGAACctggaaactgagcattcaacttcccctt
caagtggcttctacgcttggacactagggttgcacgtctttggagtagaacgattcttgacaag
cggaacca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 658
Transcript exons: 6667386-6667651,6668074-6668206,6668363-6668621
CTGGAAACTGAGCATTCAACTTCCCCTTCAAGTGGCTTCTACGCTTGGACACTAGGGTTGCACG
TCTTTGGAGTAGAACGATTCTTGACAAGCGGAACCAACGATTGAACCACATCAGCCATTAGTGG
CCTGTAGTCAGCCTCTTGTTGAACACACATGGCAGCAATGGCAGCCACTTGGACAGCATCTTTC
AATGAATATTGACCCTCCAGTGCAGGATCCAAGATCTGCACAACCTTCTCTCGGTCTGTGAGCA
TAGGCAATGCCCAGTTAACTAGAACACCTTCGCCTGGAGGCCTCTTCATATCAACTGGCACCCT
GCCAGTAAGCAACTCCAGAAGTACAACACCGTAACTATAGACATCGGATTTGGTCGTCAAATGC
CCGGTCAAAGCATATTCTGGTGCAACATAACCTTGTGTGCCTAGAACTCGAGTTGATACATGAC
CACCAGCTCTATCAGATCCAAGCTTAGCCAAACCAAAATCTGACACTCTTGCACGGAAGTCCTT
GTCCAGTAGAATGTTGCTGCTCTTGAAGTCTCTGTGTATAACAGGTGGATTAACACGCTCGTGA
AGATATTCCAGACCTTTTGCTGCTTCAAGAGCTATTCTCATTCTAGTAGGCCAGTCCAATTTTG
AGATACCACCACAGGAAC
						
					

						Genomic sequence
						
							CTGGAAACTGAGCATTCAACTTCCCCTTCAAGTGGCTTCTACGCTTGGACACTAGGGTTGCACG
TCTTTGGAGTAGAACGATTCTTGACAAGCGGAACCAACGATTGAACCACATCAGCCATTAGTGG
CCTGTAGTCAGCCTCTTGTTGAACACACATGGCAGCAATGGCAGCCACTTGGACAGCATCTTTC
AATGAATATTGACCCTCCAGTGCAGGATCCAAGATCTGCACAACCTTCTCTCGGTCTGTGAGCA
TAGGCAATGCCTGCATCAATGCAACTAGCCACAGGTCAGATATATGCAATGTTTAAATATTATT
TTTGAAGATAAATAATTACATGGAACCTTTCCTACCTAGTATAACAAGAGAGGCAGATGGATCC
TAATTAAGCTGTAACGTGATTCACTAGCATAAGAAAATGACAGGAATAATGAAGCAGAGTCGAT
TGAAGTGCATGGTAAATTTTAGTGTTGAAGTACATGTACTGATGTACCTTAGTACATATTGGTT
CCTCACTTGGAAAGCATCTCAAACTTTTGCAACTGAAGTACTAAGTGTTCCATTACCTCATTTA
TACTATGAACTAAACAGTAGTACTAATTTTATAATTCCTGATGGTTGAAGAAAAACAGTTCAAA
GTAAAGATACATCGGTACAACTATGTGATGGTCAGCTAATGTTCTTACCCAGTTAACTAGAACA
CCTTCGCCTGGAGGCCTCTTCATATCAACTGGCACCCTGCCAGTAAGCAACTCCAGAAGTACAA
CACCGTAACTATAGACATCGGATTTGGTCGTCAAATGCCCGGTCAAAGCATATCTTCAGAGTTT
GTGTAGCATGCACCACATTAGAGACAGTATAATCAGTTCAACAATTCATTTATATTATCAAATC
AAACAGTAAAATGGAAAAAGAATTGAATGTATCAGTATCAAACTCAAGTTCGTTCACAATGGGT
TCAGAATTTGGTCTTACTCTGGTGCAACATAACCTTGTGTGCCTAGAACTCGAGTTGATACATG
ACCACCAGCTCTATCAGATCCAAGCTTAGCCAAACCAAAATCTGACACTCTTGCACGGAAGTCC
TTGTCCAGTAGAATGTTGCTGCTCTTGAAGTCTCTGTGTATAACAGGTGGATTAACACGCTCGT
GAAGATATTCCAGACCTTTTGCTGCTTCAAGAGCTATTCTCATTCTAGTAGGCCAGTCCAATTT
TGAGATACCACCACAGGAAC
						
					

			
		

Sequences
Splice junction sequence	GGATTAACACGCTCGTGAAGATATTCCAGACCTTTTGCTGCTTCAAGAGCTATTCTCATTCTAG TAGGCCAGTCCAATTTTGAGATACCACCACAGGAACctggaaactgagcattcaacttcccctt caagtggcttctacgcttggacactagggttgcacgtctttggagtagaacgattcttgacaag cggaacca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 658 Transcript exons: 6667386-6667651,6668074-6668206,6668363-6668621 CTGGAAACTGAGCATTCAACTTCCCCTTCAAGTGGCTTCTACGCTTGGACACTAGGGTTGCACG TCTTTGGAGTAGAACGATTCTTGACAAGCGGAACCAACGATTGAACCACATCAGCCATTAGTGG CCTGTAGTCAGCCTCTTGTTGAACACACATGGCAGCAATGGCAGCCACTTGGACAGCATCTTTC AATGAATATTGACCCTCCAGTGCAGGATCCAAGATCTGCACAACCTTCTCTCGGTCTGTGAGCA TAGGCAATGCCCAGTTAACTAGAACACCTTCGCCTGGAGGCCTCTTCATATCAACTGGCACCCT GCCAGTAAGCAACTCCAGAAGTACAACACCGTAACTATAGACATCGGATTTGGTCGTCAAATGC CCGGTCAAAGCATATTCTGGTGCAACATAACCTTGTGTGCCTAGAACTCGAGTTGATACATGAC CACCAGCTCTATCAGATCCAAGCTTAGCCAAACCAAAATCTGACACTCTTGCACGGAAGTCCTT GTCCAGTAGAATGTTGCTGCTCTTGAAGTCTCTGTGTATAACAGGTGGATTAACACGCTCGTGA AGATATTCCAGACCTTTTGCTGCTTCAAGAGCTATTCTCATTCTAGTAGGCCAGTCCAATTTTG AGATACCACCACAGGAAC
Genomic sequence	CTGGAAACTGAGCATTCAACTTCCCCTTCAAGTGGCTTCTACGCTTGGACACTAGGGTTGCACG TCTTTGGAGTAGAACGATTCTTGACAAGCGGAACCAACGATTGAACCACATCAGCCATTAGTGG CCTGTAGTCAGCCTCTTGTTGAACACACATGGCAGCAATGGCAGCCACTTGGACAGCATCTTTC AATGAATATTGACCCTCCAGTGCAGGATCCAAGATCTGCACAACCTTCTCTCGGTCTGTGAGCA TAGGCAATGCCTGCATCAATGCAACTAGCCACAGGTCAGATATATGCAATGTTTAAATATTATT TTTGAAGATAAATAATTACATGGAACCTTTCCTACCTAGTATAACAAGAGAGGCAGATGGATCC TAATTAAGCTGTAACGTGATTCACTAGCATAAGAAAATGACAGGAATAATGAAGCAGAGTCGAT TGAAGTGCATGGTAAATTTTAGTGTTGAAGTACATGTACTGATGTACCTTAGTACATATTGGTT CCTCACTTGGAAAGCATCTCAAACTTTTGCAACTGAAGTACTAAGTGTTCCATTACCTCATTTA TACTATGAACTAAACAGTAGTACTAATTTTATAATTCCTGATGGTTGAAGAAAAACAGTTCAAA GTAAAGATACATCGGTACAACTATGTGATGGTCAGCTAATGTTCTTACCCAGTTAACTAGAACA CCTTCGCCTGGAGGCCTCTTCATATCAACTGGCACCCTGCCAGTAAGCAACTCCAGAAGTACAA CACCGTAACTATAGACATCGGATTTGGTCGTCAAATGCCCGGTCAAAGCATATCTTCAGAGTTT GTGTAGCATGCACCACATTAGAGACAGTATAATCAGTTCAACAATTCATTTATATTATCAAATC AAACAGTAAAATGGAAAAAGAATTGAATGTATCAGTATCAAACTCAAGTTCGTTCACAATGGGT TCAGAATTTGGTCTTACTCTGGTGCAACATAACCTTGTGTGCCTAGAACTCGAGTTGATACATG ACCACCAGCTCTATCAGATCCAAGCTTAGCCAAACCAAAATCTGACACTCTTGCACGGAAGTCC TTGTCCAGTAGAATGTTGCTGCTCTTGAAGTCTCTGTGTATAACAGGTGGATTAACACGCTCGT GAAGATATTCCAGACCTTTTGCTGCTTCAAGAGCTATTCTCATTCTAGTAGGCCAGTCCAATTT TGAGATACCACCACAGGAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.262420658

Conservation Information
Conserved circRNAs	NA
PMCS	0.262420658

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6667502-6667426(-)
						
						Potential amino acid sequence
						
							MWFNRWFRLSRIVLLQRRATLVSKRRSHLKGKLNAQFPGSCGGISKLDWPTRMRIALEAAKGLE
YLHERVNPPVIHRDFKSSNILLDKDFRARVSDFGLAKLGSDRAGGHVSTRVLGTQGYVAPEYAL
TGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVNWALPMLTDREKVVQILDPALEGQY
SLKDAVQVAAIAAMCVQQEADYRPLMADVVQSLVPLVKNRSTPKTCNPSVQA*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	6667502-6667426(-)
Potential amino acid sequence	MWFNRWFRLSRIVLLQRRATLVSKRRSHLKGKLNAQFPGSCGGISKLDWPTRMRIALEAAKGLE YLHERVNPPVIHRDFKSSNILLDKDFRARVSDFGLAKLGSDRAGGHVSTRVLGTQGYVAPEYAL TGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVNWALPMLTDREKVVQILDPALEGQY SLKDAVQVAAIAAMCVQQEADYRPLMADVVQSLVPLVKNRSTPKTCNPSVQA*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0207700_circ_g.1

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