Detail information of Os04g0596400_circ_g.3


General Information
CircRNA Name Os04g0596400_circ_g.3
ID in PlantcircBase osa_circ_041856
Alias NA
Organism Oryza sativa
Position chr4: 30082773-30082876  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os04g0596400
Parent gene annotation Similar to UPF0195 protein CG30152. (Os04t0596400-01)
Parent gene strand -
Alternative splicing Os04g0596400_circ_g.1 Os04g0596400_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   AT-AC
Number of exons covered Os04t0596400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGCTCTTCGAGTGAGTATGGGTGCTCTGGATCCTTTATGTCTCTAATATGctgacatgacta
agttcatcattgatttcaactgaatcctcagttacaacat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 104
Transcript exons: 30082773-30082876
CTGACATGACTAAGTTCATCATTGATTTCAACTGAATCCTCAGTTACAACATTAAGCTCTTCGA
GTGAGTATGGGTGCTCTGGATCCTTTATGTCTCTAATATG

Genomic sequence CTGACATGACTAAGTTCATCATTGATTTCAACTGAATCCTCAGTTACAACATTAAGCTCTTCGA
GTGAGTATGGGTGCTCTGGATCCTTTATGTCTCTAATATG
Conservation Information
Conserved circRNAs NA
PMCS 0.349357692
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study