Detail information of AT1G66460_circ_g.1


General Information
CircRNA Name AT1G66460_circ_g.1
ID in PlantcircBase ath_circ_008932
Alias 1:24791226-24791483
Organism Arabidpsis thaliana
Position chr1: 24791226-24791483  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G66460
Parent gene annotation Protein kinase superfamily protein
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G66460.2:1
AT1G66460.1:1
AT1G66460.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCTTTTTTATCAAGTCTTTTGATGGCCACGGCTTTACGCCAAATCCCGATTCTTCCCTTAA
AAACATAGCTACAAGCTCCTCTTCCCAAAACCCTCCcatgtaaaaagcgttcgaggctgccacc
agacacatacttgtacaccaagaaaagcccttgatcgggatcgatacagaaacctagcagaggc
acaacgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTAAAAAGCGTTCGAGGCTGCCACCAGACACATACTTGTACACCAAGAAAAGCCCTTGATC
GGGATCGATACAGAAACCTAGCAGAGGCACAACGTTGGGGCTATTAAGAGAGCTTGCAATCATC
AACTCTCTGCAAAACGACTTTGGAGATTCTTTATCTTTTTTATCAAGTCTTTTGATGGCCACGG
CTTTACGCCAAATCCCGATTCTTCCCTTAAAAACATAGCTACAAGCTCCTCTTCCCAAAACCCT
CC
Conservation Information
Conserved circRNAs NA
PMCS 0.370047591
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020