Detail information of Os05g0389000_circ_g.1


General Information
CircRNA Name Os05g0389000_circ_g.1
ID in PlantcircBase osa_circ_027745
Alias NA
Organism Oryza sativa
Position chr5: 18813207-18816480  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0389000
Parent gene annotation Similar to AP2-1 protein (Fragment). (Os05t0389000-01);AP2/ERF t
ranscription factor, Regulation of cell elongation and prolifera
tion in root meristem, Organ size control (Os05t0389000-02)
Parent gene strand +
Alternative splicing Os05g0389000_circ_g.2 Os05g0389000_circ_g.3 Os05g0389000_circ_g.4
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0389000-02:7
Os05t0389000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGAACCCTGCTGATCCTTCTGCGGACCCTCTTTTCTGGACCAACTTCATCCTGCCAGCAAGT
CAACCTGTCACGATGGCAACAATAGCAACAACAACGgcataggtggacaggccgatatgaagct
cacctctgggataaaagcacatggaatcagaatcagaacaaaaaagggaaacaaggtctgtata
cccaatgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 943
Transcript exons: 18813207-18813289,18813500-18813508,18813592-18813680,18
814331-18814404,18814480-18814530,18815732-18815799,1881
5912-18816480
GCATAGGTGGACAGGCCGATATGAAGCTCACCTCTGGGATAAAAGCACATGGAATCAGAATCAG
AACAAAAAAGGGAAACAAGTATATTTAGGTGCATATGATGATGAAGAGGCTGCAGCAAGAGCTT
ATGACCTTGCTGCATTGAAATACTGGGGAGCTGGGACACAAATAAACTTTCCTGTCTCTGATTA
TGCAAGAGATCTTGAGGAAATGCAGATGATCTCCAAGGAGGATTATCTTGTGTCTCTTCGGAGA
AAGAGCAGTGCCTTTTCCAGGGGTTTACCAAAATATCGCGGCCTTCCTAGGCAGCTCCATAATT
CCAGATGGGATGCTTCTTTGGGACACTTGCTTGGCAATGACTACATGAGCCTAGGGAAGGACAT
CACGCTGGATGGGAAATTTGCAGGAACCTTTGGCTTAGAGAGGAAAATTGATCTGACAAATTAC
ATAAGGTGGTGGCTCCCAAAAAAGACACGGCAGTCAGATACATCTAAAATGGAAGAGGTTACTG
ATGAAATCCGTGCTATTGAAAGTTCAATGCAACGGACTGAGCCTTATAAGTTTCCTTCCCTTGG
CCTCCATTCTAACTCAAAGCCCTCTTCCGTGGTCCTATCAGCATGTGATATCTTATCTCAGTCT
GATGCCTTCAAAAGCTTCTCAGAAAAATCTACAAAACTATCTGAAGAATGTACTTTTAGCAAAG
AAATGGATGAAGGAAAGACAGTTACCCCAGTACCTGCAACTGGACATGACACAACTGCAGTTAA
CATGAACGTGAATGGGTTGCTTGTGCAAAGAGCTCCATACACATTGCCCTCTGTTACTGCACAA
ATGAAAAATACCTGGAACCCTGCTGATCCTTCTGCGGACCCTCTTTTCTGGACCAACTTCATCC
TGCCAGCAAGTCAACCTGTCACGATGGCAACAATAGCAACAACAACG

Genomic sequence GCATAGGTGGACAGGCCGATATGAAGCTCACCTCTGGGATAAAAGCACATGGAATCAGAATCAG
AACAAAAAAGGGAAACAAGGTCTGTATACCCAATGCAAATTAGCAGCTATATTTTACATGTTTT
GAAAAGTTGACCAAGGGACGTTGGAAGCTAGGTGAATTTTAATTGTATTTCATAGATAATCCAT
GCACGTCATTTCCTTTTATATCTAGCTATAATTAATCTGATTTAATGGAATTGTCTCTTTTGCA
TGGGAAATTATCACCCAAAATGGCCCTGCAAGTGCAGTATATTTAGGTAAGAAATCTTTGGTGT
TAACTGTAAAATGTGCAATTGTATAAACTTCTTTATCCACATCAATTCAATGCGCAAATACACA
GGTGCATATGATGATGAAGAGGCTGCAGCAAGAGCTTATGACCTTGCTGCATTGAAATACTGGG
GAGCTGGGACACAAATAAACTTTCCTGTGAGTCATCTATACTTGCTAATTATAATTGGTTTCTT
AGCTTCCATTTAGTTCTTCTACAATTATTAACCACACACTGCCTTTTCTTCAAGACCTTCATTT
GGTTAAATTTAATCATTTATATTTTGCATCACCTGAGCTCAATTTCGAAGACTGATTCTCTTAA
GATGCAAATTGAAAACCAAAAGATATCTTAGAGAGTGTTGTACCAAACTTTGGATCATACTAGT
CCAAACATATCCTATGCAACTATTGTGTGATGTTTGAAAAATCTGAATACTCTTGACTATTATA
TTATGTTCTTTTGTATGCAAAGGTTAGGGATTTATTCAGTTTACACTTGACGATTCGGAGATGG
ATGTTTGTGTCCTTGACAAAAAAAATCTCTTGTTTTCAGAAAATTCATCTCTGAGCATATAAGC
GACATTGAAAAATCATTGTCTCAGAAGAATATTGGCAAAACAAACATATGCATACATGCCATCT
CTTCAGTTTGGTATCTATATGCCTATACATCTCGATGGAAAATAATTGCGATGTTGCTTATGAA
TTATTGTACTATGTTTTTTCCATTCTATATTTTGCACTAGTTAATTTGATTTGTGGTAATCTTT
TTCAGGCTTATGTTCATTATGTATTTGCTTATTTAGGTCTCTGATTATGCAAGAGATCTTGAGG
AAATGCAGATGATCTCCAAGGAGGATTATCTTGTGTCTCTTCGGAGGTATATTTGTGAATTTAT
AATACGTGCATATTACTTTGTTTCTTAAGTACTAACTGTAAGACACATGCACTGCAGAAAGAGC
AGTGCCTTTTCCAGGGGTTTACCAAAATATCGCGGCCTTCCTAGGTACTTATTAGCAATGAGAA
ATATATTTGGAAGTTAACTCTATGTTCAGTTATTATATTTGCATGCATGTTTGTGATGCTAATT
CAGTAACAAGTCTCATGTCCAATTTTCTTTTCTATTGTGCACAAACTATCATTGTCCATGTTTT
GTTTATTTCGGTAACATTTTCCATCTTGCTACAAATATTTATGGCAAACCAAGTAGTAGTATGT
AAAGATGATGCCCTGTGGTATATTACATTAGAAATTATTTTCAGCAACTTCATGTATTTCTGCT
ATGAATTAAATTAGTAAGCTCAGCAGATTTTTGGAGGTAGATAGCTTAGATACTAAACTACTAG
CTCTTATTCGTGTGTCATTGGTCTTCATTTAGAGAATTTTAAAATAAAGTGTCATTTAGCAAAG
ATGCAAACCTTCAAGTTTTGCTGAACATTAATTCTTTCCAATAATCACTCGATTGCACAGCCAC
AGTCCCTCAACTGTACTTGTGATGCTGAATGTGCGTCATCGAAATTCTGTGTTTCCTCACTGAT
TACTGTTGTCAATGGAAATTCGGCATTCAGTGCCTTCGTTCTTTGTATGGTTACAGCTATCCTG
CTTTCTGTGGGATCTCAACCAACCAAAACATAATATTCTCAACAGAATATCCTTTCAGAGGAGA
GTGATTACTTGTAGCTGAGATTTTGAAGAGATCGACATACTTGAAATTTCCTTCTAGGATAGGA
TCCCGACTTAATAGTGTCCTGAGGACCACTAGAAATTAGTTTAGGAAAGTTTATTATTTGGACA
TATAAAGTAAAACTATACTCCCTCCATACTCATAAAGGAAGTCGTTTAGGACAATGTTTAAGTC
AAACCTTGGGAATATAAATCATTAATAACTCTTAAGTTGTTGAGTTTGACAATGCAAAAATTAT
ATGAATATATTTGCCTTGAAAAATACTTTCATAAAAGTATACATATATCACTTTTCAATAAATA
TTTTTATAGAAACAAGAAGTCAAAGTTGTGTTTTGAAGACCATCTCGCTGTCCTAAACGACTTC
CTTTACGAGTACGGAGGGTGTACGTAATTCTGTTTTACTTAATTATTCACCAGATGTCAGTCTT
CGACTAATCATTACAGTGCACTACACTGCTGGACACGTACAGTCACATTGATATAAATTTTATA
ACTGCAACTGTTGTGACATTATCATGCAGGCAGCTCCATAATTCCAGATGGGATGCTTCTTTGG
GACACTTGCTTGGCAATGACTACATGAGCCTAGGTTGTGGTGTCTCCATAAAAACTTCTACACT
GCTGTTTCTGGTTAACAAACTACAGAGGAGAAAGACAAATTCTATGTGGTTTTGTAACCAGTCT
TTCTATTTAAATTACAGGGAAGGACATCACGCTGGATGGGAAATTTGCAGGAACCTTTGGCTTA
GAGAGGAAAATTGATCTGACAAATTACATAAGGTGGTGGCTCCCAAAAAAGACACGGCAGTCAG
ATACATCTAAAATGGAAGAGGTTACTGATGAAATCCGTGCTATTGAAAGTTCAATGCAACGGAC
TGAGCCTTATAAGTTTCCTTCCCTTGGCCTCCATTCTAACTCAAAGCCCTCTTCCGTGGTCCTA
TCAGCATGTGATATCTTATCTCAGTCTGATGCCTTCAAAAGCTTCTCAGAAAAATCTACAAAAC
TATCTGAAGAATGTACTTTTAGCAAAGAAATGGATGAAGGAAAGACAGTTACCCCAGTACCTGC
AACTGGACATGACACAACTGCAGTTAACATGAACGTGAATGGGTTGCTTGTGCAAAGAGCTCCA
TACACATTGCCCTCTGTTACTGCACAAATGAAAAATACCTGGAACCCTGCTGATCCTTCTGCGG
ACCCTCTTTTCTGGACCAACTTCATCCTGCCAGCAAGTCAACCTGTCACGATGGCAACAATAGC
AACAACAACG
Conservation Information
Conserved circRNAs NA
PMCS 0.348020294
Functional Information
Coding potential Y
Potential coding position 18814362-18813209(+)
18813644-18816446(-)
Potential amino acid sequence MQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSRWDASLGHLLGNDYMSLGKDITLDGKF
AGTFGLERKIDLTNYIRWWLPKKTRQSDTSKMEEVTDEIRAIESSMQRTEPYKFPSLGLHSNSK
PSSVVLSACDILSQSDAFKSFSEKSTKLSEECTFSKEMDEGKTVTPVPATGHDTTAVNMNVNGL
LVQRAPYTLPSVTAQMKNTWNPADPSADPLFWTNFILPASQPVTMATIATTTA*(+)
MQQGHKLLLQPLHHHMHLNILVSLFCSDSDSMCFYPRGELHIGLSTYAVVVAIVAIVTG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017