Detail information of BGIOSGA035064_circ_ig.1


General Information
CircRNA Name BGIOSGA035064_circ_ig.1
ID in PlantcircBase osi_circ_009445
Alias Chr11:7652068_7652815(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 6709900-6710647  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACATATTGAGAGCAGGAGACGCATGCATGCTATGCTACACCCTGTTGCTGCTAAAACCCAAGC
ACACATCATTTGACATGGTACTCACTGTCCCAAAACccccttgaagtgcctttggatccgttga
actctagttgaaggatgtgagcatacaagccgtcttaattcagcggttgtagaacatgagaaga
atttctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCTTGAAGTGCCTTTGGATCCGTTGAACTCTAGTTGAAGGATGTGAGCATACAAGCCGTCTT
AATTCAGCGGTTGTAGAACATGAGAAGAATTTCTGAAATTGACAGATCAGAGTTCAGTTAGTTG
ATCAGAAAACAGGAATGTCAAAATCTAGCTCTTGTTATAAAAGAAGTGAAGAAATTTCACAGGA
ATTTTGCGAATAACCATTGCGGTTTATCTGGAATTTTCATAAACACCCCTCTTTATCGGCAAAA
CCGTAAAAACCCCATTTGCAAAGGCTGCAACCTGGAAAATTCTAAAGCATCAAATTTGGGCTCA
CATATTCTCAATTGGACCACATATATCATGTTTGAAAATCAAAATCAAAATTTTCCCCAGTACT
CCTTACAGACAGCACAGCGATTTCTCGATTAATTCAACGGATCAGAGGACCACTCACCAGAAAC
TGCCGCGGAATTAGATCTCTGCATATTCTCACCGCTAAAAATCACCGAATAATCTGTACAATCC
ACGATAAATGCTGGGAACAATTTGCAGGCAGGGTTAGCGAAATAAATCACGCCTGACATTATAT
TTTGCATGGCAGGAGGCAAAACAAAGTACGGACCTAATCACAAGTACTGTGAGTGTACATTGGC
ACCAATTAAACATATTGAGAGCAGGAGACGCATGCATGCTATGCTACACCCTGTTGCTGCTAAA
ACCCAAGCACACATCATTTGACATGGTACTCACTGTCCCAAAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021