Detail information of AT2G03110_circ_g.1


General Information
CircRNA Name AT2G03110_circ_g.1
ID in PlantcircBase ath_circ_012637
Alias Ath_circ_FC1146
Organism Arabidpsis thaliana
Position chr2: 935895-936093  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT2G03110
Parent gene annotation At2g03110
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03110.2:1
AT2G03110.3:1
AT2G03110.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGTAGTACACTGCAACATCAACCTGGTAGAATTCTGATGAATCCTGCAGTAACGACCTCTCA
TAAAAATTGCTCGTGAGAATGAGGAGATGGTCCAAataattggagatccttctgctgttagaga
agctctttaccaagttgcctttctgctttataataatccgtcacgattttagaactactttctg
tcttcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAATTGGAGATCCTTCTGCTGTTAGAGAAGCTCTTTACCAAGTTGCCTTTCTGCTTTATAATA
ATCCGTCACGATTTTAGAACTACTTTCTGTCTTCCTCTAGTAGTACACTGCAACATCAACCTGG
TAGAATTCTGATGAATCCTGCAGTAACGACCTCTCATAAAAATTGCTCGTGAGAATGAGGAGAT
GGTCCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.155358038
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a