Detail information of Solyc08g074520.1_circ_g.1


General Information
CircRNA Name Solyc08g074520.1_circ_g.1
ID in PlantcircBase sly_circ_002627
Alias NA
Organism Solanum lycopersicum
Position chr8: 58624604-58628487  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc08g074520.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc08g074520.1.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCCAGAGTCGTATGTTTAACATTCTCAGCAATTGATCCAATAGCATGAGCAGCAGCAACTCT
AGTGTCCCACTTTTTACTCCTAAGATATTGTGAAACcttattagagctcgacatgtcaggacac
atgcccctaggagatattatatcttgtgcttgtggagcttctgtatctccatccttattccatc
cttttgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATTAGAGCTCGACATGTCAGGACACATGCCCCTAGGAGATATTATATCTTGTGCTTGTGGA
GCTTCTGTATCTCCATCCTTATTCCATCCTTTTGTTTGGTCCTTTGAGCTTATTTTTGCTTTCC
GCTTCAAAAGATTTAGTTCTCGTGCACTTGGCCTCCGAGATCTGACACTTGGTACCATATTTGC
AACATATTGCCGGATATTGCCAACGGGTCTAGATGAATAATATTGAGCAGCAACACCATTTCCT
GGAGAATTAGCTCTCTGCATGATCAGGTCCTCATCCCTTATCATTTCATTGACATCCATGAACT
GTTCACACACATCTAATCCTGATTACGAGAATGACTACCTGTTAGTTTACAAATAATTTATTTG
TTTAGCCACATGAGAGAGAATAAGGAAGCACACCGCTACATCAACTAGCAAAGACGAGAGAACC
AACGTCAAGATTTTTCATATGAGGAAAAAATAGTTAACACCTAAAAACTGATTACAATTAACTC
ATTCAAGAATAATGAACAAAAACGAGAGAAAATTGAAATAGAAATAGCAAACATGTTCCCTAAG
AAAACTTATTTCCACTAGCAACTTCTAATTAGTTGGACTTAGTAGAACAGTGGAGCATTCTACT
AACTTACAGCATCTACAGTTAAATATGCTGACATGCACTTAGACAGAGCAGATCCCACAGCCCA
GCAGTACCAATAACTGAACCAGTAAGTGTCGAGGCTACTACACACTGCTATATCAGCCCATCTA
CTGATATATAGAAACAAGAGTTAAGCTCGGTGTGAACAATTTGACCTAAATGATCCAAGAACTA
TTATCATCCAGGGTAGGGTGGTTATGTCACTTAAAATAGGGAAACTAGTAAATAAACTCAGAGA
GTTTTGATTCTTACTCCCACGTGCAGGTGGACGGGTGAGTAACTGAGATTCAATCTATGAAGTA
CGTCGTAATAACCTCACATACCTAGCACAGTTTCTTCCTCCCATAGCTGCCTCGCATCTAATCA
CACGACATATCTTCAAGTTTTGCTTTCTACAGATCATAACTATCATGGACCACCCAATAAGAAA
CACTTTTTAGTGGTTTTTACGTAATTTACATGGTAATCACAGATACAAATATAGAGAACTGCAA
TAAGTTCTAGAAATTGTTATTGAATTGGTTGAATCAAAAAAATGACAGCAAAAATTCCATTTGT
TTCTTCTGCAAGTGCCGTGGAAATTCAACGATACCGGCAGGGAATGCCTACCTAAGAAATTTCT
GATTTACTCCTTCCAATCCCCAACCCAAAGAAAAGAACATAATACAACACTAGGTGCAGAAACT
AGTGTTATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCCCAAAACGTGTTGAGCGCTTCGCCTA
GATTCATGTGCGCATTAGTGTCGTCATCAAGGTTCTAAGGCAAACTTTTCCTTGCCAATGAGTC
TTTTGGAAGAAGTGACGCTAAACAATTGACATTTCACTTATCATAATTTTTTTCAATTTCTTTG
GTTATATATTTGTCATTCATGTTTATAATTATTAGCCTTGGACCAAACATATATATTTCTATTT
TTTTCTCCCTTTGCGCCTTTTTTCATCAAAGCCCACGCTTTATTTGTGTTTTGCACTTAAAGTC
CCCACGGACCATAGAGCCTTTTTGCGCTTTTCACTTTTGATAACACTGGCAGAAACCAGCATTA
GGGTTAATATACTCAAAGAGAGTTTGGAAGAAAAAGTTTCTAAAACACGAACGAGGCAAACAAT
GGAAAAGGTTACTTTCTTGCATAGCTGACATCTTGTACAATGACAATCAGATAGCCTTGATAGT
GTCTAAGAACATGCTCAAGTTTATTAACTGCCCAACACTCATTTTAGGTTTATCCAAAAATTAT
CTCTAATATTCTACAAGAGAGCCCAATTCTCCACAAAATTGAGTACTCCTTTATATTTATTTGT
CAACAGGATACTTCTAAAATCTACTGTTGCACCCACTTTGACTCGAACCGAGTAAGACTTGAAC
TCTTATCTTATTAACACTATGCAAACAATGAGCCCCTTACATAAGAAAGAAGGTGGGAGAACAC
ATTGCACACATGTAATCTACAACATAGCATAGGAAACTATATAAACAATCCTCATTAGAATTAT
TTTACGTGCATTGTAATTCTCGCTCTTTTTAATGGTGCCAGGCCACCTCTTCGTTCATCTGCTT
TCTTTTTCTTGTTCTTTGATAACTGAAAAAATCCCAAGGGCCAATGATGCACGGTTTAAACTCG
GTAGATAATGGACATCTAACTTTCTCCAATTAAATACCAGGCTTTTGTCTGCAGCAGGGTTCGA
ACGCATGACGAGTGAGCATTTAACCTACACACCATATGTTGCTCTCCTGCCACTAGAAAAAAGT
CCCAGATGCCTTTCATCCATCTAGGTTTCAAGCTTCCTCCACCCTACCTATCTTTTGCAACACA
TCTTCAATCTCCTCTCTTAAGTACTACTCACTTGACGTGGGTTGTTAAAGAACGACAAAAGCCC
CACATCGGTGTGGACTCCTTATAAGGCTTGGGCAATCCTCCTCCCTTTGAGCTAGATTCAAAGG
TGTGAGTTAGGGCTAAGACCTAATTTCACACAAACCAAGTAAGATTTTATAAACGGCAGATCTA
ATTAAAGCTTCTCTAGAAACAACACTTTGTACCATTTGACAACACTACCCTACCCACCACCCTG
CAAAGTTTTCTGGCTCGTTTATACAGCCAACCAATTTTAGTAGTTACAATACCACTAACACACA
AGCATAACCTCAACCAGAAATCTTTCTGATTAGTTATAGAGTAGTTTTAGTGGCATTGAAATCA
TTAGCTATCAACAAAATAGGTCAGCTACTCAGTAATTGATGTGAACTCACCCAATCGACGTCGC
AGGTTTTGTTTCTGGCGGGCCAACCGCTCCCTTGAATTCTTGCTATTGTCCATAGGAATATCAT
ACTCCTGAATAAAGACAATATAAAGCATTGAATAATATATGTATATTACTTACAAAAAACGACA
AACAAACAAAAAAAATTAAAATGGCAAAAATAAATCACTAGATTAAAGAGAACAGGGCACACAT
GCTGGAATTCAGAACGTTGACTGTCTATTTGTGCATCTGTCTTCAGCGAAATGCAAATATTATG
TTGGATCATTAAAAAATGACTTTCTACCTCGCAATGCACTAAGAATGTTGCATCACGAACTCCA
AGAATTAGCAGTCATTGAATCCAAGAAGAATCTCAAATAAGTATAAAGCAACACTTATCAAACA
GCTTTTCCTAATGCATTCACATTAAGGAAGCATCAGAGGGTTTAAAAGGTCAAAAGGAAAACTA
AAGTACCTGTCCTGCGGATGCCAATAGAGCCCCAAACTCAAGTACTTTGTTCAAATCAAAACTG
CAGGAATAATATACAAAACTCAGTGACCTAACAATGCAATAATACTATACCTTCTCAGCCTATA
GGCTATGATCAAGTGTGGTAACAATCAATACCAGTGAACTACTTAAAAAGAGCAATTGACTATT
ACATCTAAGCAGCAAATAGATTCAAAAGGAAGAACCACACAGTATATGATATCGTATCAAGAAA
GATGAATACAGAATGTGCAACCTTCTGAAAGAGGTCCCTCCTATTTTAGGATAACAATTAGGCC
AAGCTACCAATTCTTCAACATTGCCTGAGATTCCTTCTTCAGACATTTTCACCTCTACAGATGA
ACAGTGTTCAGCCAGAGTCGTATGTTTAACATTCTCAGCAATTGATCCAATAGCATGAGCAGCA
GCAACTCTAGTGTCCCACTTTTTACTCCTAAGATATTGTGAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.119284385
Functional Information
Coding potential Y
Potential coding position 58628363-58624606(-)
Potential amino acid sequence MSEEGISGNVEELVAWPNCYPKIGGTSFRSFDLNKVLEFGALLASAGQEYDIPMDNSKNSRERL
ARQKQNLRRRLGLDVCEQFMDVNEMIRDEDLIMQRANSPGNGVAAQYYSSRPVGNIRQYVANMV
PSVRSRRPSARELNLLKRKAKISSKDQTKGWNKDGDTEAPQAQDIISPRGMCPDMSSSNKVSQY
LRSKKWDTRVAAAHAIGSIAENVKHTTLAEHCSSVEVKMSEEGISGNVEELVAWPNCYPKIGGT
SFRSFDLNKVLEFGALLASAGQEYDIPMDNSKNSRERLARQKQNLRRRLGLDVCEQFMDVNEMI
RDEDLIMQRANSPGNGVAAQYYSSRPVGNIRQYVANMVPSVRSRRPSARELNLLKRKAKISSKD
QTKGWNKDGDTEAPQAQDIISPRGMCPDMSSSNKVSQYLRSKKWDTRVAAAHAIGSIAENVKHT
TLAEHCSSVEVKMSEEGISGNVEELVAWPNCYPKIGGTSFRSFDLNKVLEFGALLASAGQEYDI
PMDNSKNSRERLARQKQNLRRRLGLDVCEQFMDVNEMIRDEDLIMQRANSPGNGVAAQYYSSRP
VGNIRQYVANMVPSVRSRRPSARELNLLKRKAKISSKDQTKGWNKDGDTEAPQAQDIISPRGMC
PDMSSSNKVSQYLRSKKWDTRVAAAHAIGSIAENVKHTTLAEHCSSVEVKMSEEGISGNVEELV
AWPNCYPKIGGTSFRSFDLNKVLEFGALLASAGQEYDIPMDNSKNSRERLARQKQNLRRRLGLD
VCEQFMDVNEMIRDEDLIMQRANSPGNGVAAQYYSSRPVGNIRQYVANMVPSVRSRRPSARELN
LLKRKAKISSKDQTKGWNKDGDTEAPQAQDIISPRGMCPDMSSSNK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016