Detail information of Os12g0274750_circ_g.6


General Information
CircRNA Name Os12g0274750_circ_g.6
ID in PlantcircBase osa_circ_011096
Alias NA
Organism Oryza sativa
Position chr12: 10081019-10081086  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene Os12g0274700
Parent gene annotation Similar to Petunia ribulose 1,5-bisphosphate carboxylase small s
ubunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0274
700-01);Similar to Petunia ribulose 1,5-bisphosphate carboxylase
small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (O
s12t0274700-02)
Parent gene strand -
Alternative splicing Os12g0274750_circ_g.1 Os12g0274750_circ_g.2 Os12g0274750_circ_g.3 Os12g0274750_circ_g.4 Os12g0274700_circ_g.5 Os12g0274700_circ_g.7 Os12g0274750_circ_g.8
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os12t0274750-00:1
Os12t0274750-00:1
Os12t0274700-02:1
Os12t0274700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGggcacccacttggaacggagcaggtactcg
atct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTG
GCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.241421569
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017