Detail information of BGIOSGA014908_circ_g.1


General Information
CircRNA Name BGIOSGA014908_circ_g.1
ID in PlantcircBase osi_circ_014453
Alias Chr04:24052995_24053510(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 21949344-21949859  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014908
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014908_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered BGIOSGA014908-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCGGTGTTGCTATGTGCATGCCGTCGATGAGTTCTTGAAGTTGTGATAATACCGAGTTCTTCT
CTCTGATAGTGTTTGACGCCTCTTCCAGTTTCTGTTcctgggcgaagaacgccttgagggagag
gaagagcaggacgagctggaggaggccgaagaggcatatcttgagcgtccggctctgcatcctc
agcacctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGGCGAAGAACGCCTTGAGGGAGAGGAAGAGCAGGACGAGCTGGAGGAGGCCGAAGAGGCA
TATCTTGAGCGTCCGGCTCTGCATCCTCAGCACCTGCGTCGTCCCGAACAGCTCCCTCTCGTGG
ACCTCCAGCTTCTCCACCTGCTCCTTCAGCTTGACGATCTTGCTCTCCGTCTCCCGCAGCTTCA
CCATCATCATCATCCTCGCGTTGTCGCTGTCGCAATCGCCATCGCCATTGTCGCCACCGGAGGA
GGACAGCTTGTGCTCCTTGAGGGCGAGCTGGTCCTCGGTCCGGACCTGCCAGCTCTGCCTCGCT
TTCAGCATGACGAGGGATTGGATCTCGGCTTCGATCTTCTCCTGGAGCTGGCGGTCGAGGTCCG
TCTCCAGCTGATCGATGTCGAAGGCCCTCTCCGCCGGTGTTGCTATGTGCATGCCGTCGATGAG
TTCTTGAAGTTGTGATAATACCGAGTTCTTCTCTCTGATAGTGTTTGACGCCTCTTCCAGTTTC
TGTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021