Detail information of BGIOSGA012043_circ_igg.3


General Information
CircRNA Name BGIOSGA012043_circ_igg.3
ID in PlantcircBase osi_circ_004604
Alias 3:5439809|5443590
Organism Oryza sativa ssp. indica
Position chr3: 5439809-5443590  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA012043_circ_igg.1 BGIOSGA012043_circ_igg.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCGATCAGCGAAATTCACGGATCTCATCGGTGAAGACAAGATATTCCTGACTGTCGGGGACGC
AGTGAAGAAATTTGCTCCTAAGGCAGTAGAGAATGTctgcttcagtactgcgcttcatgtgcag
ataggttcgccttcagcaccttgccggtgaataacgccggcaatgccgcgagccgtgtccgacg
ggggcgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTCAGTACTGCGCTTCATGTGCAGATAGGTTCGCCTTCAGCACCTTGCCGGTGAATAACG
CCGGCAATGCCGCGAGCCGTGTCCGACGGGGGCGAGGCCATCGACGCCGACATCGCCAGCCGGA
CGTCATCGCACAGCCACATGGACGGCGGCCATCATCATCATCATCACGGCCACAAGGTCGAGTT
CCCACCGAAGAAGAAGCTCATCGACGAGTTCACCGACGCCGTGAAGGAGACGTTCTTCGCCGAC
GACCCGTTGCGGCAGTACAAGGACCAGCCGATGTCAAAGAAGGTGTTGATCAGCCTGCAAAACT
TCTTCCCGGTGCTGGACTGGGGCCGGCACTACACCTTCCGCAAGTTCAGGGGCGACCTCGTCTC
CGGCCTCACCATTGCCAGCCTCTGCATACCCCAGGTTTGTGCCTGACGATCAAACACCATCTTG
CACGCACAGCAGCGACCTGAATAGCACAGCTCCTGCATGAAAATTGCATACAATCTTCGTCATC
AACCCTGACATTGCAACACTTCATCCAGGACATCGGTTATGCGAAGCTTGCTGGCCTATTACCA
AATTATGGACTGTGTAAGTGCACAGAATTCACTTACTAGTATTTGTATAGGGTGTGCTCGAGTG
ATAGTCCAGCCAGTGGTCTAACTGAAATCTGCTGATTTTTCAGACAGCAGCTTCGTACCGCCTT
TGATATACGCGATGATGGGAAGTTCCAGGGATATAGCCATTGGTCCAGTGGCCGTCGTTTCGCT
GCTGCTTGGCACTCTCCTCCAGAATGAGTTTGATCCCAAGAAGAATCAGGAAGAGTACACCCGG
CTGGCCTTCACTGCAACGTTCTTCGCTGGGGTCACCCAGGCAGTGCTCGGATTCCTCAGGTGAG
TGGCTACCTGCAAAGTGATCATTGTTAAGCAGTCAGTTCTTAGATATGCAGTTCTGCCCTCTTG
GGTTCTTAGAGTGGACAGTTTACCATAGAGTGAGATTGTACTCTGCTGCAGGCTAGGGTTTATC
ATAGAGTTCTTGTCCCATGCTGCCATCGTTGGATTCATGGCGGGAGCGGCCATCACCATTGCCC
TTCAGCAGCTTAAAGGCTTCCTTGGAATTGCAAACTTCACCAAGAAGACTGACATCATCTCGGT
CATGAAATCAGTCTGGGGAAATGTTCACCATGGGGTAGGACAAAATAATATCATTCCTTTAAGA
ACTTATTGCTTCTTCATCATTCTTTGATGGAAACCAGTATTGGGTACAACTGATGCTAGCTTGG
TTGCTGCTGCAGTGGAACTGGCAGACGATATTGATCGGAGCATCCTTCCTGACATTCCTCCTGG
TTGCAAAATACATTGTAAGATAAACTATACTAAATGTTCAGATTTTGATCTTGGATATCCTTGT
TAGGGAAAACGTTTACTGGTTCTCATAATCACAGTTTCATTTGGGCATTTCAGGCAAAGAAGAA
TAAGAAACTCTTTTGGGTGGCTGCAATTGCACCACTCACTTCGGTGATCATATCCACCCTTTTT
GTCTATATCACTCGAGCAGACAAGCATGGTGTCGTGATTGTAAGTCAATCTTGACAGCTCGTAA
CCCTTTCCATTAGGAAAAGAAACAAAATTATGAAACAAATCAAAGCTAATATGAAGTATGTTAC
TGATTAATTGCAGGTCAAGTACATAAAGAAAGGCATCAATCCACCTTCAGCTAGTCTCATATAC
TTCAGTGGCCCAAACCTGATGAAAGGATTCAGAATAGGAGTAATAGCTGGCATGATAGGCCTAA
CAGTAATGCAAACTTCACCATCTTAAAGATTAAAAATTTGTTGCATGGAAAGGTACTATTCACA
AGACAGTGCAGTGTTCACTGATCAATTGCTGCTAACTTTATCAGGAAGCAATTGCAATAGGAAG
AACATTCGCTGGCCTGAAGGACTACAAGATTGACGGAAACAAGGAAATGGTTGCTCTAGGAACA
ATGAACATTGTTGGTTCAATGACTTCTTGCTACGTAGCTACAGGTAACCGTTAATTCAGCCAAA
AAAAAATTAGACCAAGTAATTCAGCCAAAATAACTCATAGCCCATACATATATACCATTCTCGT
GACCCTTTTTTCTCCCTTATGTACAGGTTCTTTCTCGCGGTCAGCAGTCAATTACATGGCTGGC
TGCCAAACAGCGGTATCCAATATTGTTATGTCAATTGTAGTACTGCTCACACTGGAGCTGATTA
CTCCATTGTTCAAGTATACGCCCAATGCCATCCTTTCTTCCATCATCATATCAGCAGTGCTTGG
CTTAGTCGACTACCACACAGCATACCTTATCTGGAAGGTTGATAAACTTGACTTTCTGGCATGC
TTAGGAGCATTCTTTGGCGTCATATTTTCATCAGTGGAGTATGGTCTGCTAATTGCGGTGCGGT
TTGCAATCAACTCTGTCCTATACTTACAATTAAGCTCCTTGTAACAGTAAACATAAGGGCTGAT
GGTACTTGAATTTGTTTTGGAACAGGTTGCGATCTCACTCGCTAAAATTCTTCTACAAGTTACA
CGACCCAGAACAGTTTTGCTTGGTAACCTTCCAAGAACAACATTATATAGGAATATCGACCAGT
ATCCAGAAGCTACCTTGGTACCAGGAGTGGTAATAGTTAGGGTGGACTCAGCTATCTACTTCAC
AAACTCGAACTATGTTAAAGACAGGTATAAGTTCAAAACTGGTGGGTTTTTTTCTCAGTTGCTA
GTATGACTGCAGTGCTATTTAATACTCCCTCCATTTTTATTTAAATGATGTTGGTTAGTCCAAT
TTGAACTAACCAACATCAAATAAAAAAACAGAGGTAGTATTATAAAATTCTCAGGACGGTTTAT
CTCCAGTTAGTTTTATTTGATAGAGCTTGTCCAGGAAATATGAGATTAACCATGCTTTTTAGGT
ACGCATCAATAATCTGAGTTGACATTTGCAAGTAGAGAAAAGAAGAGTTGGAAATAAACTAAGC
AAATACTGTTCAGTTTCTGCTCTGACTCACTTTATTTTATTACGAGATGTTCATGAATAAACTA
CATCGATTTGTTATTAACATTCATGTTCATCCTTTCCTACTGATTACTATTCTTTGGGTGGGAC
TTTAAATCTGCTACTGAATTCAGAAATCAACTCTACCTAAAAAACGTAAGACTACATGTGCAAG
TGCCTTGTGCATTTCGCATTATTCAATGTTTCATATTATCTGATTTCAGAATCCTGAGGTGGCT
GAGGGACGAGGAAGAACGTCAGCAGGAACAGAAGCTACAGAAAACTGAGTTTCTGATTGTTGAG
CTATCTCGTAAGGGCATAGTGTATTTATTTCTGCAAATAATAGTTGAGATCACTACTGATATGG
AGTTATTGGCTAACAAACTGATCTAATTCTTCAACAGCGGTAATTGACATTGATACAAGTGGAA
TCCATGCCTTGGAGGATCTATTTAGAGCACTTGAAAAGCGCAAAATCCAGGTAAAACACCAAAA
CTAGTGTCAACCAGTGTAAAGATTTTACAGCCATTAGCACTGATCCTTGTACAGTAATACTGTT
CATATAAGAAATCCTTAGTTAAGGTAGTAATATTAAAATCCACGTGCTTGACTTACAGCTGATT
CTAGCCAATCCGGGGCCAGCTGTGATCCTGAAGCTCCGATCAGCGAAATTCACGGATCTCATCG
GTGAAGACAAGATATTCCTGACTGTCGGGGACGCAGTGAAGAAATTTGCTCCTAAGGCAGTAGA
GAATGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021