Detail information of BGIOSGA014806_circ_ig.2


General Information
CircRNA Name BGIOSGA014806_circ_ig.2
ID in PlantcircBase osi_circ_014516
Alias Chr04:25284540_25284994(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23320529-23320983  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACAAGATTTCATTCACTGACCTGATGGTCAGATGAGGAGGAAGAAGGGGAAGAAGAGGAGAC
GTTGCTCTCATCCCTCGATCCATGCAGCTCCAAGGCcctgttgatcattgcaggcacattctca
gaagaaatgatcacaactggtatgtccttcaatgaagatgacacttgtacccccaaaatgagga
gcaaaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTGATCATTGCAGGCACATTCTCAGAAGAAATGATCACAACTGGTATGTCCTTCAATGAA
GATGACACTTGTACCCCCAAAATGAGGAGCAAAAGGAGCAAATTTTACTCCACTTCCAGCAACA
AAGGACCCAAGATTTATGAATGCTCACAGGATAAGAATAAATTCAATGCAAACAAAACTTACCT
TCACCCTCTTCAGTAGATCATACTGTCATGCCAGGCATGTAGTAGTCAGTGATTATCACGTTGA
CATCAATCTCCAGTACAACAGTTCAAAAAACCACAGGATTGATTTCCTGGATAGCAAGCACAGC
ATAAGAGAATTCTAAAGGAACACGAAACAAATAAAGAACAAGATTTCATTCACTGACCTGATGG
TCAGATGAGGAGGAAGAAGGGGAAGAAGAGGAGACGTTGCTCTCATCCCTCGATCCATGCAGCT
CCAAGGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021