Plant Circular RNA Database

Detail information of POPTR_0019s04840_circ_g.1

			
						 General Information
					
						CircRNA Name
						POPTR_0019s04840_circ_g.1
					
						ID in PlantcircBase
						pop_circ_004250
					
						Alias
						Chr19:3756393-3761056
					
						Organism
						
							Populus trichocarpa						
					
						Position
						
							chr19: 5070227-5074894  JBrowse»						
					
						Reference genome
						
							Populus trichocarpa genome v3.0 						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							POPTR_0019s04840						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						stem xylem
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						POPTR_0019s04840.1:7

General Information
CircRNA Name	POPTR_0019s04840_circ_g.1
ID in PlantcircBase	pop_circ_004250
Alias	Chr19:3756393-3761056
Organism	Populus trichocarpa
Position	chr19: 5070227-5074894 JBrowse»
Reference genome	Populus trichocarpa genome v3.0
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	POPTR_0019s04840
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	stem xylem
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	POPTR_0019s04840.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGTCCAGCAACAAGGTCACAGTAACATTCTTGGCATGCCACCTCTTGCCGGTGGGAATCATAAG
CAGTTTCCCACCCAACAAAACCCACTTTTGCAGCAGgatccaaaggagaaagctaaatcagaaa
caagggattggttgaataatgtggtatgtgagtaagctgtttgatttgctttcttattatctac
aatgactt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GATCCAAAGGAGAAAGCTAAATCAGAAACAAGGGATTGGTTGAATAATGTGGTATGTGAGTAAG
CTGTTTGATTTGCTTTCTTATTATCTACAATGACTTAGAGTGTATGTAAAATAATACAGTCCTG
ACCTTTCAAATTTCGTTTCGTAGTGCTGGTATTGTAAAATCTTTCACTGTGACTTTTTATTGAC
CTGTCCTCTTTGGTCCTACTGCATGGGCATTTGCAGCTGGTTGGTTTTGTGTGCTAATTAATAT
CCAAAGCCTTATACTTATCCCAGAAAAAAAATTTCAATGATTTGGAAGAACTATCTAAGTTATA
AATGCTTGATGGCTTATAGATTGATCTAATAGCATTTAACATAGTAAAACTGAAAAAATCAGTT
GTTTTCCTTTCAAGACATTCCTCATTCAGTCCTAAAACATTTTTTTGCCAACTGTGTTTGAAAA
TTGCTGTATTATGTCACTTTGCTCCTTTATGAATTCTCATTTCATCAGTGGTGTTTTAAGTAGC
TTTTTCCTTGAGTAGGTTGGGGAACTGGAATCTCAGATTGATGCCTTTGAAGCTGAGATTGAGG
GGCTCACTGTCAAGAAAGGAAAGACAAGGCCACCCAGACTGGTAGGACAGAAAAGGAAATGCGG
TTTTTAGAATCAATATATCCTTCCTTTTATAATTTTTATTTTATCCCTTTTGTCTGGCAGACAC
ATTTAGAGGCATCCATCACACGGCACAAACTTCATATAAAGAAATTAGAGTTGATCTTGAGGCT
ACTAGACAATGATGAATTGAGTCCTGAGCAGGTTAATGATGTTAAAGACTTCCTGGATGACTAT
GTGGAACGTAATCAGGTTTGTGTGTATGTGTGTGTTTTTATCACCCTTATTGTAAGAGGCATCA
TGCGTTGTCTAAGTGGATTTTCCCATGTTAACCTGTATATTTTCATTTCATTCCAGTATTCTTG
ATGGGATAGTGTGTTCATATGCTTTGTTTTATGTCACCTCAATTATCAATTTGCTTGTTGTCTT
CTTTGTAGGAAGATTTTGATGATTTTAGTGATGTTGATGAGCTGTACAACTCATTACCATTAGA
CAACTTGGAGTCTCTTGAAGACCTGGTTATAATTGGTCCTCCTGGTCTTGTGAAGGTAAAATTT
ATTGGCTGCAGACTTTACTTCTAATTATTTTGCCATTTAGAGATGGGAATGCAGTCGTCTTTTT
TATCTGTGGGTGTGCTTGTTCTCTTCTTTCTAACGTGAGATGGAAAAATAATCTCAGCCTTTTA
AAGAAAAATGTTTAGTTAATACATTTTGTCTTTTTTTTTTGTGGTGGTGTTTCTTTTGGTCAGT
TTTATTGTAAATTTATCATTTTTTTCTCTGCAGGGTGCTCCTGTTCCAGTATTAAAGACTTCTT
TGGCAATAACGGCTCCTCAGGCTCCTCAAACACCTGTACGTTTACACACTATCTGGGACTGTAA
TTCTGATTTAGCTTTTAAAGTCATGATGGATCTTATATATATTAGTGGTGTCATTTAAGCATTC
CTTTGAGAGCTCTTTTTTTTTTAGAGAGGTTGTGTTCCCCTGTTTTGTTGTAGCAAGCTGCAAG
ACTTGGTTCAGTTGTACCTTGCTGATTCAGTGACCTGCACGGGACATTGTTGATGCATTTTGAC
TTTGATTAGTTGCCAAGGGAGTTTTTTGCTATATCTTGCTTTAAGATTTAGTGGGACCTATGAT
GCTAGGGCTTCCACAAATGACATGTTTGATTCCTATTTTATTTTGAAGTGATGAAAGATATGTG
AAAGTTGCACGTAATGTACATTACTTTTCCTTTTGGCTCTTCTAACTCTTTTATTTGACATAAT
ATAGTTAGATGTTTATATTTCTGTTTGGTTTAATAAGTTTTTATATTAGTTTGTTTGGTCAAAG
TTGTTATTTACCAAGGGTTATTGCTAAATAGTTATTTTTCTTTCAATATAACTTACTTGTGATT
GTTTTTGTCTTCGTATTTTTTTTTAATAATTTCTTTTTAGGGTGGGGTTTATATATACCATGTA
TCTTCAAGAGCTAACAACAAACCTTTTCTCATGTTGTGGACCACTTTTATTGTATTTGCATTCA
TAAAAAGACCAGGAATTTACCATTTCTAATATCTGCACTTATTAATTCCTTAAATGCTTTTCAG
CTATGTGCTTTGTCCTAACATTGTTGCTACACCTACGGAATGATAATTTTCTTTCCAGGCCACT
GTTTCTTCTCCGCCTCATCAGAGTGTTGTTGGTCAAGAGCAAGCCGATGATACTGCTTCACAAG
ATAGTAATTCTGATATTGTTGCTAGAACTCCTGCCAAAAGTGGTATGGTTGGTTCTTCAGCTGC
ATCAACACCAACTGGGAACCATGCACCTATTTCTGTGAATGTTCAGGTTCAGACATTGCCTAGT
CTGTTAGCAGTTTCTCCAACTCTTCCTGGTTCATCTTCTGTTCGAGGTGTCTTGGAAAATGCTG
CTCCTGCTAATCCTTCTCATGTAACCCTGACCAATGCTGCCAATTCTGCAAAGGATGAAGAAAT
TGCAGGCTTCCCTGGCCATAGATCATCATCACCTTCTCTTGTTGATACTGGACTAGCAAGGGGC
ATTGGTAGAGGTGGCCTCTCTAGCCAGCCCTCATCTAGTATCTCCCTCAGTCCTGGTGTAATTC
CTAGCAATGGAGCTCTTGGTTCAGTACCTTCAGCTTCTGACATTGCAAAGAGAAATGTTTTGGG
AACTGACGATAGACTTGGGAGTGGTGGAATGGTGCAGCCCTCGGTGTCTCCACTAAGTAACAGA
ATGATGTTGCCTCATGCTAGCAAGGCAAGTGATGGAACTGGTGCAGTTGATTCTAGTAATGCTG
GTGATGCTGCTACTCTGAGTGGCAGAGTTTTCTCTCCTTTGGTCACTGGCATGCAATGGAGACC
TGGAAGTTCCTTTCAAAGTCAGAATGAACCGGTATGCCACTTGTTTTAACATTTTGTTTGTCTT
CCTTGTTGATTTTTGTAACAACATAGGGGTGCAAGTGTGTGTTTGTGTGTTCTTTATTTTAGAG
GATATCTTGGTTTTTGAAATTTTTTACCGTATAAAGCCCCATTTGTCAATGAGAAGTCCAGACA
TGAACTACCCATCCACCTTCCCCCCTTTCACCATAACCAAACATCAAGAAACTTTATTTTGTGG
AGCATTTGCACTAATGTCAATGGCTTTTATCCGGGATGGTCATCATCCTCCTAGTCGAATTGTG
GCTCAAGTTGTAATTAAACTGTGTTTATTGGGTGGGCCAAAAAATGAGACTTTTGGAAACATGA
CTGAAAATATTCAACTTCAATTTTTTAGCATACATGAATTAGCATACTAGATCCATTTATTATA
TCACCTTAGTATGTGACTACAATTAAACTATTAGCGGAAATGCTAATTGCTGTTATCTGGTCTT
GATTCTGGTTGCCTCCTTGTTGCAATGAGTGGTCGCCACCCTCCAAGGGTAATGGAGGCTCAAG
GTGTTTATTAAGATGTGTTTCACTAAGGGGCCCAAAAAAAGGATATTGGAAATGCTATTGAAAA
TTCAAAATTTCAATTTGCAAAGCATATTTGATACGAGTTTTGGTTTAGCAAGTGATGGAGATGT
TTTGTCCACCCATCCTCTTTGGAAGATGAATGTCTTTTTACATTATCACTGGATTATATATCTA
TCATAGTCTAAATTCATGTTAAATTGAACATCTATGTTAATAACCACCAACATTAATAGTATAT
AATAACTTAATTGTGTAATGGGTGATTTTTCATTCATGCAAGCTACAACTAATATAATGTGCGG
CTAGTCAACTAAAAGAATATGCGCGTGATAAGATAACGATCCAATGGAAAATGCTATAAGATTC
ACTTCACATGAAATTCTTCGTACAATGTGGCTTTAGTCCTTTCTAGTGAGGGTATTGGTGATGG
ACCAGTATATAATAGTTGTATATATAAGATGCTTAATCATATGAAGAAAATAAATGCAATAAAA
CCCCCCTCTTATATAATTTTGTTTCAATGGTGACTGAACTGTTATGCATTTTGTATGTGCTTTA
TTTTGCTAAACAGCCAAGAGATGAGTTTTTCTTTTTAGAAAAGAAGAGGGTGAAAAGAAACGTC
ATACCATGCTAACTGGTGGTGGTAAAGGTAAAGAACTGGAAATAAGAGAAAAAGTAGAGGGGAA
GAGTGAGGGAAGCTGGATGAGTAAACCTTCAATGAGAAATATTTTGATAACTCGCTTACATTTT
TTAATATTTGCTGCATGTGGTTTTACTTAATAGACAATTGACAACAATTGCGTACATCAAATGT
TTTAGAATTAGCTTCTTGACGTGAATTGTCCATGTCAGAACATGTTGATTTAATTGTTCCTTAA
GTTCACTTAATGGGTTTTTTTATTAAGAAATATTGCCAAAACTTGTTGCCATTTTGTTTTAAAG
TAACAATATTTCTTCTGTAGGGCCAATTTCGTGCAAGAACTGAAATAGCTCCTGATCAGAGAGA
GAAATTCTTACAGCGTCTTCAGCAAGTCCAGCAACAAGGTCACAGTAACATTCTTGGCATGCCA
CCTCTTGCCGGTGGGAATCATAAGCAGTTTCCCACCCAACAAAACCCACTTTTGCAGCAG
						
					

			
		

Sequences
Splice junction sequence	AGTCCAGCAACAAGGTCACAGTAACATTCTTGGCATGCCACCTCTTGCCGGTGGGAATCATAAG CAGTTTCCCACCCAACAAAACCCACTTTTGCAGCAGgatccaaaggagaaagctaaatcagaaa caagggattggttgaataatgtggtatgtgagtaagctgtttgatttgctttcttattatctac aatgactt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GATCCAAAGGAGAAAGCTAAATCAGAAACAAGGGATTGGTTGAATAATGTGGTATGTGAGTAAG CTGTTTGATTTGCTTTCTTATTATCTACAATGACTTAGAGTGTATGTAAAATAATACAGTCCTG ACCTTTCAAATTTCGTTTCGTAGTGCTGGTATTGTAAAATCTTTCACTGTGACTTTTTATTGAC CTGTCCTCTTTGGTCCTACTGCATGGGCATTTGCAGCTGGTTGGTTTTGTGTGCTAATTAATAT CCAAAGCCTTATACTTATCCCAGAAAAAAAATTTCAATGATTTGGAAGAACTATCTAAGTTATA AATGCTTGATGGCTTATAGATTGATCTAATAGCATTTAACATAGTAAAACTGAAAAAATCAGTT GTTTTCCTTTCAAGACATTCCTCATTCAGTCCTAAAACATTTTTTTGCCAACTGTGTTTGAAAA TTGCTGTATTATGTCACTTTGCTCCTTTATGAATTCTCATTTCATCAGTGGTGTTTTAAGTAGC TTTTTCCTTGAGTAGGTTGGGGAACTGGAATCTCAGATTGATGCCTTTGAAGCTGAGATTGAGG GGCTCACTGTCAAGAAAGGAAAGACAAGGCCACCCAGACTGGTAGGACAGAAAAGGAAATGCGG TTTTTAGAATCAATATATCCTTCCTTTTATAATTTTTATTTTATCCCTTTTGTCTGGCAGACAC ATTTAGAGGCATCCATCACACGGCACAAACTTCATATAAAGAAATTAGAGTTGATCTTGAGGCT ACTAGACAATGATGAATTGAGTCCTGAGCAGGTTAATGATGTTAAAGACTTCCTGGATGACTAT GTGGAACGTAATCAGGTTTGTGTGTATGTGTGTGTTTTTATCACCCTTATTGTAAGAGGCATCA TGCGTTGTCTAAGTGGATTTTCCCATGTTAACCTGTATATTTTCATTTCATTCCAGTATTCTTG ATGGGATAGTGTGTTCATATGCTTTGTTTTATGTCACCTCAATTATCAATTTGCTTGTTGTCTT CTTTGTAGGAAGATTTTGATGATTTTAGTGATGTTGATGAGCTGTACAACTCATTACCATTAGA CAACTTGGAGTCTCTTGAAGACCTGGTTATAATTGGTCCTCCTGGTCTTGTGAAGGTAAAATTT ATTGGCTGCAGACTTTACTTCTAATTATTTTGCCATTTAGAGATGGGAATGCAGTCGTCTTTTT TATCTGTGGGTGTGCTTGTTCTCTTCTTTCTAACGTGAGATGGAAAAATAATCTCAGCCTTTTA AAGAAAAATGTTTAGTTAATACATTTTGTCTTTTTTTTTTGTGGTGGTGTTTCTTTTGGTCAGT TTTATTGTAAATTTATCATTTTTTTCTCTGCAGGGTGCTCCTGTTCCAGTATTAAAGACTTCTT TGGCAATAACGGCTCCTCAGGCTCCTCAAACACCTGTACGTTTACACACTATCTGGGACTGTAA TTCTGATTTAGCTTTTAAAGTCATGATGGATCTTATATATATTAGTGGTGTCATTTAAGCATTC CTTTGAGAGCTCTTTTTTTTTTAGAGAGGTTGTGTTCCCCTGTTTTGTTGTAGCAAGCTGCAAG ACTTGGTTCAGTTGTACCTTGCTGATTCAGTGACCTGCACGGGACATTGTTGATGCATTTTGAC TTTGATTAGTTGCCAAGGGAGTTTTTTGCTATATCTTGCTTTAAGATTTAGTGGGACCTATGAT GCTAGGGCTTCCACAAATGACATGTTTGATTCCTATTTTATTTTGAAGTGATGAAAGATATGTG AAAGTTGCACGTAATGTACATTACTTTTCCTTTTGGCTCTTCTAACTCTTTTATTTGACATAAT ATAGTTAGATGTTTATATTTCTGTTTGGTTTAATAAGTTTTTATATTAGTTTGTTTGGTCAAAG TTGTTATTTACCAAGGGTTATTGCTAAATAGTTATTTTTCTTTCAATATAACTTACTTGTGATT GTTTTTGTCTTCGTATTTTTTTTTAATAATTTCTTTTTAGGGTGGGGTTTATATATACCATGTA TCTTCAAGAGCTAACAACAAACCTTTTCTCATGTTGTGGACCACTTTTATTGTATTTGCATTCA TAAAAAGACCAGGAATTTACCATTTCTAATATCTGCACTTATTAATTCCTTAAATGCTTTTCAG CTATGTGCTTTGTCCTAACATTGTTGCTACACCTACGGAATGATAATTTTCTTTCCAGGCCACT GTTTCTTCTCCGCCTCATCAGAGTGTTGTTGGTCAAGAGCAAGCCGATGATACTGCTTCACAAG ATAGTAATTCTGATATTGTTGCTAGAACTCCTGCCAAAAGTGGTATGGTTGGTTCTTCAGCTGC ATCAACACCAACTGGGAACCATGCACCTATTTCTGTGAATGTTCAGGTTCAGACATTGCCTAGT CTGTTAGCAGTTTCTCCAACTCTTCCTGGTTCATCTTCTGTTCGAGGTGTCTTGGAAAATGCTG CTCCTGCTAATCCTTCTCATGTAACCCTGACCAATGCTGCCAATTCTGCAAAGGATGAAGAAAT TGCAGGCTTCCCTGGCCATAGATCATCATCACCTTCTCTTGTTGATACTGGACTAGCAAGGGGC ATTGGTAGAGGTGGCCTCTCTAGCCAGCCCTCATCTAGTATCTCCCTCAGTCCTGGTGTAATTC CTAGCAATGGAGCTCTTGGTTCAGTACCTTCAGCTTCTGACATTGCAAAGAGAAATGTTTTGGG AACTGACGATAGACTTGGGAGTGGTGGAATGGTGCAGCCCTCGGTGTCTCCACTAAGTAACAGA ATGATGTTGCCTCATGCTAGCAAGGCAAGTGATGGAACTGGTGCAGTTGATTCTAGTAATGCTG GTGATGCTGCTACTCTGAGTGGCAGAGTTTTCTCTCCTTTGGTCACTGGCATGCAATGGAGACC TGGAAGTTCCTTTCAAAGTCAGAATGAACCGGTATGCCACTTGTTTTAACATTTTGTTTGTCTT CCTTGTTGATTTTTGTAACAACATAGGGGTGCAAGTGTGTGTTTGTGTGTTCTTTATTTTAGAG GATATCTTGGTTTTTGAAATTTTTTACCGTATAAAGCCCCATTTGTCAATGAGAAGTCCAGACA TGAACTACCCATCCACCTTCCCCCCTTTCACCATAACCAAACATCAAGAAACTTTATTTTGTGG AGCATTTGCACTAATGTCAATGGCTTTTATCCGGGATGGTCATCATCCTCCTAGTCGAATTGTG GCTCAAGTTGTAATTAAACTGTGTTTATTGGGTGGGCCAAAAAATGAGACTTTTGGAAACATGA CTGAAAATATTCAACTTCAATTTTTTAGCATACATGAATTAGCATACTAGATCCATTTATTATA TCACCTTAGTATGTGACTACAATTAAACTATTAGCGGAAATGCTAATTGCTGTTATCTGGTCTT GATTCTGGTTGCCTCCTTGTTGCAATGAGTGGTCGCCACCCTCCAAGGGTAATGGAGGCTCAAG GTGTTTATTAAGATGTGTTTCACTAAGGGGCCCAAAAAAAGGATATTGGAAATGCTATTGAAAA TTCAAAATTTCAATTTGCAAAGCATATTTGATACGAGTTTTGGTTTAGCAAGTGATGGAGATGT TTTGTCCACCCATCCTCTTTGGAAGATGAATGTCTTTTTACATTATCACTGGATTATATATCTA TCATAGTCTAAATTCATGTTAAATTGAACATCTATGTTAATAACCACCAACATTAATAGTATAT AATAACTTAATTGTGTAATGGGTGATTTTTCATTCATGCAAGCTACAACTAATATAATGTGCGG CTAGTCAACTAAAAGAATATGCGCGTGATAAGATAACGATCCAATGGAAAATGCTATAAGATTC ACTTCACATGAAATTCTTCGTACAATGTGGCTTTAGTCCTTTCTAGTGAGGGTATTGGTGATGG ACCAGTATATAATAGTTGTATATATAAGATGCTTAATCATATGAAGAAAATAAATGCAATAAAA CCCCCCTCTTATATAATTTTGTTTCAATGGTGACTGAACTGTTATGCATTTTGTATGTGCTTTA TTTTGCTAAACAGCCAAGAGATGAGTTTTTCTTTTTAGAAAAGAAGAGGGTGAAAAGAAACGTC ATACCATGCTAACTGGTGGTGGTAAAGGTAAAGAACTGGAAATAAGAGAAAAAGTAGAGGGGAA GAGTGAGGGAAGCTGGATGAGTAAACCTTCAATGAGAAATATTTTGATAACTCGCTTACATTTT TTAATATTTGCTGCATGTGGTTTTACTTAATAGACAATTGACAACAATTGCGTACATCAAATGT TTTAGAATTAGCTTCTTGACGTGAATTGTCCATGTCAGAACATGTTGATTTAATTGTTCCTTAA GTTCACTTAATGGGTTTTTTTATTAAGAAATATTGCCAAAACTTGTTGCCATTTTGTTTTAAAG TAACAATATTTCTTCTGTAGGGCCAATTTCGTGCAAGAACTGAAATAGCTCCTGATCAGAGAGA GAAATTCTTACAGCGTCTTCAGCAAGTCCAGCAACAAGGTCACAGTAACATTCTTGGCATGCCA CCTCTTGCCGGTGGGAATCATAAGCAGTTTCCCACCCAACAAAACCCACTTTTGCAGCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.100496131

Conservation Information
Conserved circRNAs	NA
PMCS	0.100496131

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							5072576-5074891(+)
						
					

						Potential amino acid sequence
						
							MVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTNAAN
SAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVIPSNGALGSVPSASDI
AKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFSPLV
TGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLAGGNHKQFP
TQQNPLLQQDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLEASIT
RHKLHIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNLES
LEDLVIIGPPGLVKGAPVPVLKTSLAITAPQAPQTPSVVGQEQADDTASQDSNSDIVARTPAKS
GMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTNAA
NSAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVIPSNGALGSVPSASD
IAKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFSPL
VTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLAGGNHKQF
PTQQNPLLQQDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLEASI
TRHKLHIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNLE
SLEDLVIIGPPGLVKGAPVPVLKTSLAITAPQAPQTPSVVGQEQADDTASQDSNSDIVARTPAK
SGMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTNA
ANSAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVIPSNGALGSVPSAS
DIAKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFSP
LVTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLAGGNHKQ
FPTQQNPLLQQDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLEAS
ITRHKLHIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNL
ESLEDLVIIGPPGLVKGAPVPVLKTSLAITAPQAPQTPSVVGQEQADDTASQDSNSDIVARTPA
KSGMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTN
AANSAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVIPSNGALGSVPSA
SDIAKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFS
PLVTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLAGGNHK
QFPTQQNPLLQQ(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	5072576-5074891(+)
Potential amino acid sequence	MVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTNAAN SAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVIPSNGALGSVPSASDI AKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFSPLV TGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLAGGNHKQFP TQQNPLLQQDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLEASIT RHKLHIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNLES LEDLVIIGPPGLVKGAPVPVLKTSLAITAPQAPQTPSVVGQEQADDTASQDSNSDIVARTPAKS GMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTNAA NSAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVIPSNGALGSVPSASD IAKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFSPL VTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLAGGNHKQF PTQQNPLLQQDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLEASI TRHKLHIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNLE SLEDLVIIGPPGLVKGAPVPVLKTSLAITAPQAPQTPSVVGQEQADDTASQDSNSDIVARTPAK SGMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTNA ANSAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVIPSNGALGSVPSAS DIAKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFSP LVTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLAGGNHKQ FPTQQNPLLQQDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLEAS ITRHKLHIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNL ESLEDLVIIGPPGLVKGAPVPVLKTSLAITAPQAPQTPSVVGQEQADDTASQDSNSDIVARTPA KSGMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTN AANSAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVIPSNGALGSVPSA SDIAKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFS PLVTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLAGGNHK QFPTQQNPLLQQ(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Liu et al., 2021

circRNA

Detail information of POPTR_0019s04840_circ_g.1

Address

Any questions?

Supported by