Detail information of Os02g0690700_circ_g.7


General Information
CircRNA Name Os02g0690700_circ_g.7
ID in PlantcircBase osa_circ_016013
Alias NA
Organism Oryza sativa
Position chr2: 28357482-28357975  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, circseq_cup
Parent gene Os02g0690700
Parent gene annotation Clathrin coat associated protein AP-50 domain containing protein
. (Os02t0690700-01)
Parent gene strand +
Alternative splicing Os02g0690700_circ_g.2 Os02g0690700_circ_g.3 Os02g0690700_circ_g.4 Os02g0690700_circ_g.5 Os02g0690700_circ_g.6 Os02g0690700_circ_g.8
Support reads 2/3
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0690700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACTGATAGCCTTCAGATAAGCCTGTTCCGAATGCCACTCTACAAGTTACTGGTGCTGTTGGT
TGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgcagtggctcttttcaagtcatactttg
gtggtgcttttgatgaagatgctatcagaaataactttgttttaatctatgagcttcttgatgg
taagggac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 276
Transcript exons: 28357482-28357975
GCAGTGGCTCTTTTCAAGTCATACTTTGGTGGTGCTTTTGATGAAGATGCTATCAGAAATAACT
TTGTTTTAATCTATGAGCTTCTTGATGAAATTATGGACTTCGGTTACCCTCAAAACCTCTCACC
TGAAATCTTAAAATTGTATATAACTCAAGAAGGAGTTCGGTCGCCATTTTCCTCCAAGCCTTCA
GATAAGCCTGTTCCGAATGCCACTCTACAAGTTACTGGTGCTGTTGGTTGGAGAAGAGAGGGTC
TTATGTACAAGAAGAACGAG

Genomic sequence GCAGTGGCTCTTTTCAAGTCATACTTTGGTGGTGCTTTTGATGAAGATGCTATCAGAAATAACT
TTGTTTTAATCTATGAGCTTCTTGATGGTAAGGGACATCTTATTTTTGGACTTTGTTTCATCAA
TTTGCACTGTGGATGCTTCTATTTACCTGTAGAACTGTCTCTCTCATCTAACTGTGCAGAAATT
ATGGACTTCGGTTACCCTCAAAACCTCTCACCTGAAATCTTAAAATTGTATATAACTCAAGAAG
GAGTTCGGTCGCCATTTTCCTCCAAGGTGAGAAAAATGTGACATTGAAATAAGATAACCGGATA
AAAAGTCACATCAAATAGTTTGTTGCTCATTTATTTTGTGTGAAAGCATCTGAATCATTTTTTT
TTTGTTCTCTGCACTGATAGCCTTCAGATAAGCCTGTTCCGAATGCCACTCTACAAGTTACTGG
TGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAG
Conservation Information
Conserved circRNAs osi_circ_012137
PMCS 0.332894568
Functional Information
Coding potential Y
Potential coding position 28357675-28357972(+)
28357909-28357551(+)
Potential amino acid sequence MDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEAVAL
FKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPV
PNATLQVTGAVGWRREGLMYKKNEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQN
LSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEAVALFKSYFGGA
FDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVT
GAVGWRREGLMYKKNE(+)
MPLYKLLVLLVGEERVLCTRRTRQWLFSSHTLVVLLMKMLSEITLF*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016;Chu et al., 2017