Detail information of BGIOSGA005681_circ_g.1


General Information
CircRNA Name BGIOSGA005681_circ_g.1
ID in PlantcircBase osi_circ_004241
Alias 2:32385837|32386413
Organism Oryza sativa ssp. indica
Position chr2: 32385837-32386413  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA005681
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA005681_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA005681-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTTCACAGTAGTTCTGGTTGCCTTGCAACTCTTGACATAATAAATCCTTGGGAGGGACTAT
CTTTTCTTTTGCCGGCTTATATAAAGGATGAGGTCCtctggagcacttcggataggtgttgatg
tcattccccatctgggtacatagtcatcccctagaaacatatatcctccaccatttggatctct
agtgatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTGGAGCACTTCGGATAGGTGTTGATGTCATTCCCCATCTGGGTACATAGTCATCCCCTAGAA
ACATATATCCTCCACCATTTGGATCTCTAGTGATACAATGACCAAAAACATTGGAAATAATGCC
TTGGTTGGCCAGCTGACTGGGAAGGCTTATTCCTGCACTACTAAGACCAAGGATCCCATCGGTC
TTAGCTGGTGAGGCCAAAAGCTGGCCTTGCTGATCATATGCACACCTACATTTGTAGGACATCA
AGCAGTCAGAATGTCAGATATTTATATGATTTGACACCATTTGTCATAACATATAGTCTGTCGG
CTACATATCCTCTCTTAAAAGGTTTGAACATACCCAAACACAAAATCTAGTTTTTCCCTTCCAC
CATTAGTAGTGATAATATGCATATCATCCCTAGCAAGGACACCCATGGAGGAGCTTCGATCAGC
ATATTCAATCTCATAATCACATTGCTTGCATGTTTCACAGTAGTTCTGGTTGCCTTGCAACTCT
TGACATAATAAATCCTTGGGAGGGACTATCTTTTCTTTTGCCGGCTTATATAAAGGATGAGGTC
C
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 32386268-32386376(-)
32385877-32386376(-)
32386315-32385859(+)
Potential amino acid sequence MGVLARDDMHIITTNGGREKLDFVFGCAYDQQGQLLASPAKTDGILGLSSAGISLPSQLANQGI
ISNVFGHCITRDPNGGGYMFLGDDYVPRWGMTSTPIRSAPEDLILYISRQKKR*(-)
MGNDINTYPKCSRGPHPLYKPAKEKIVPPKDLLCQELQGNQNYCETCKQCDYEIEYADRSSSMG
VLARDDMHIITTNGGREKLDFVFGCAYDQQGQLLASPAKTDGILGLSSAGISLPSQLANQGIIS
NVFGHCITRDPNGGGYMFLGDDYVPRWGMTSTPIRSAPEDLILYISRQKKR*(-)
MFHSSSGCLATLDIINPWEGLSFLLPAYIKDEVLWSTSDRC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021