Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.009G081400_circ_g.1 |
| ID in PlantcircBase | gra_circ_000929 |
| Alias | Chr09:5890700|5894072 |
| Organism | Gossypium raimondii |
| Position | chrChr09: 5890700-5894072 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.009G081400 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 3 |
| Tissues | ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Gorai.009G081400.2:8 Gorai.009G081400.1:8 Gorai.009G081400.3:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.177756058 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
5890718-5894069(+) 5893400-5890739(+) |
| Potential amino acid sequence |
MLVPHSDLTDNHQPMEVVSQAENANTVENQPVEDPPSSRFTWKIDNFSRLNTKKHYSDVFVVGG YKWRILIFPKGNNVDHLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNAR ESDWGFTSFMPLGELYDPCRGYLVNDTFVVEAEVVVRKIVDYWAYDSKKETGYVGLKNQGATCY MNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDT YDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQ LDVKGCRDVYASFDKYVEVERLEGDNKYQAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMR DTMVKQQEDEEMLVPHSDLTDNHQPMEVVSQAENANTVENQPVEDPPSSRFTWKIDNFSRLNTK KHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHSKYSI RKDTQHQFNARESDWGFTSFMPLGELYDPCRGYLVNDTFVVEAEVVVRKIVDYWAYDSKKETGY VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVAT KELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYK STRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEQYGLQDAKKGVLFIDFPPVLQL QLKRFEYDFMRDTMVKQQEDEEMLVPHSDLTDNHQPMEVVSQAENANTVENQPVEDPPSSRFTW KIDNFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSASLPYGWSRYAQFSLA VVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGELYDPCRGYLVNDTFVVEAEVVVRKIVDY WAYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFY KLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHM NYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEQYGLQDAKKGV LFIDFPPVLQLQLKRFEYDFMRDTMVKQQEDEEMLVPHSDLTDNHQPMEVVSQAENANTVENQP VEDPPSSRFTWKIDNFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSASLPY GWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGELYDPCRGYLVNDTFVVE AEVVVRKIVDYWAYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSG SIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEG TIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAE QYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVK(+) MWIINLQGRSHFMTYSLMLKAVEMYMLLLTSMLKLNGLKVIISIRLSNMDCRMLRRVCCSLISL QSFNFSLNVLNMILCEILWSSNRKTRKCSCHTLI*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |