Detail information of orai.009G081400_circ_g.1


General Information
CircRNA Name orai.009G081400_circ_g.1
ID in PlantcircBase gra_circ_000929
Alias Chr09:5890700|5894072
Organism Gossypium raimondii
Position chrChr09: 5890700-5894072  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.009G081400
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Gorai.009G081400.2:8
Gorai.009G081400.1:8
Gorai.009G081400.3:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATGCTAAGAAGGGTGTGTTGTTCATTGATTTCCCTCCAGTCCTTCAACTTCAGCTTAAACGT
TTTGAATATGATTTTATGCGAGATACTATGGTCAAGcaacaggaagacgaggaaatgctcgtgc
cacactctgatttgaccgacaatcaccagcccatggaaggtacctatttttagaaaataaaata
aattcaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAACAGGAAGACGAGGAAATGCTCGTGCCACACTCTGATTTGACCGACAATCACCAGCCCATGG
AAGGTACCTATTTTTAGAAAATAAAATAAATTCAGAATTTTACTTATTTGAATATAGCTTACGT
CAATGTTAGTTCCCAAAATGGTTGTACTTGTTTCTCAGGGGTATCACTGACAAAAAAAAGTTTG
ATTTGGTTGTGATTCTTGTGATTTTATGTCTCAATTTTTAGTTGTATCACAAGCTGAGAACGCA
AATACCGTGGAAAATCAACCAGTGGAGGATCCTCCTTCGTCAAGATTCACTTGGAAGATTGATA
ATTTCTCTAGATTAAACACCAAGAAGCATTATTCAGATGTTTTTGTAGTTGGTGGTTATAAATG
GTATATTGCTTACTCTTGCTGATAGTACTTACTTTCATTTTTTCTTTCATGATTTTCTTTTATT
GGCTATATTAGCTGAGGATTGATATTTTTGGTTTGAATTGCGTAGGCGAATACTGATATTTCCA
AAGGGTAACAATGTGGATCATTTGTCCATGTATCTGGATGTTGCTGACTCAGCAAGTTTACCCT
ATGGGTGGAGTAGATATGCGCAGTTCAGCTTGGCAGTAGTTAATCAAATTCATAGTAAATATTC
AATCAGAAAAGGTATTTCCTTTTTAGCATACCATCTATACACTTACTGTTTAGAAATCTTTTTG
GGTGTTAAAGTGGATACAAAGTTTGCTGCTGGGTTTAGATAGCTTGTAACATGGTTGGAGAAAA
ATGATGATTAGATATTGTATAGGAAGTTGCATGAGCGTCAGTTTTGTTTTTGATTTGATCAATA
CAAGAACATTACTTATTGGTGATTTTGTTCTACCATGTCGAAGTGTATGCTTTTTTCACCCTTT
GCACAGATTAATACGGGTTTGATGCAATTAAAGGCAGGTCATATCTGATTACTCATTTTACGAG
AAAGAAACATGGCCATATGAACCGTTTATGATTCTCTATGTTTCAACCTGGATTTCTTGATATC
ATTATCAGTTTCAATGATTAAGATACATAATTACCAATGTTGTCAAGGGCGCCAAGCTCACTCG
AGGCACTAGGACCTCTATATAGCCTGAGGCGCAAGGCGCAAAAACAGCCTGAGTAAACCAAAGT
GCAAGCATATAAATATAAATATATGTAAAATGCATATAAAAACATATGTAACTAATACATATAA
TTAATAAGTAAAAAAAGATAAATTTTAATATAGTTCAATTTATAAATTCAAAACATTGTTCAAT
AGTTTAGGTTTAATAATTTACTTAATGTATTGTAAAATAAGACACCGTAATAAAGATTTGTTTG
TTTGCAAGGTTGTATTGAAAAGTTTCAAGAGTTAACTAGGCTTTTATATAATATAATTAGGTCA
ATAATTAATGAAAAAAAGTCATGTACTATATTTTTCTTTTAAAAGTCAAAATAATAAAAAGAAA
ACAATAAAGAGGAGAATGGAATGGCTCTTTAGTGAAGTGCGCTTTTTTTGTGCTTGGCTTTGCA
ACAAAGGTGGCCGAAAAGCTCATCTGGCCCCCTCCTGATTGAAGTCGCCTCACTTTGAGGTGCC
TGAAGCTTTAATGGCTTTTTGCGCTGCACCTTAGTGCCTAGCGCTCGCCTTGACATCACTGATG
ATTACTTTTGGCTGGTTGTAAGTTGTTTTTTAAATTTAGAAGATAATCTGAGCATGGTGTATTT
GGATCTTGATCTTTGGTAAAAGTCCCTTTTTGTCATTGTGAGCACAATGCTTTCTTTGTATGTA
TAGCTGCTGACAATGTTCAATACTTGTTATTTTTTAATTTTAAAATCTATATGTGGCTCACTAG
GTGTGGTTGCTGGTGATGTGGACTCACTTTTCACAATTACTCTGTTGCAGATTTTGTCATAACA
TTGTATGGAATAATGTTAAGCTTATTAAATTTGCACATATCTGATTTTTATCTTGCAGACACAC
AACACCAGTTTAATGCAAGAGAAAGTGATTGGGGTTTTACATCCTTTATGCCCCTTGGTGAGCT
ATATGATCCTTGCAGAGGGTATCTTGTGAATGACACTTTTGTTGTTGAAGCAGAGGTCGTTGTC
CGCAAAATTGTGGATTACTGGGCATATGACTCAAAGAAGGAAACTGGTTATGTCGGACTTAAGA
ATCAAGGAGCAACATGTTACATGAACTCTCTGCTCCAAACCCTGTATCATATTCCTTACTTCAG
GAAGGTAAGGACTCATGCTCTATATTTTGTTGAACTGACATGTTTTTAATTTTGTATTGCTAAT
GCCTTGGATGTTACATTTCAGGCAGTTTATCATATGCCTACAACTGAAAACGATATGCCATCTG
GAAGTATCCCTCTTGCTCTGCAGAGTTTATTTTACAAACTCCAGTACAGTGACAGTAGTGTTGC
AACAAAAGAGCTGACCAAATCTTTTGGATGGGACACATACGATTCTTTCATGCAGCATGATGTT
CAAGAACTTAATAGAGTTCTATGTGAAAAACTCGAAGATAAAATGAAGGTGAAAGCTTCAATAA
TTTTTCATTCCAAGCTTATTCTAATGTGAAACCAAAGTCAAAGTTTTGATTACTTCTCTTATGC
CACCAGGGAACTGTTGTGGAGGGCACCATACAACAGTTGTTTGAAGGGCATCATATGAACTACA
TTGAGTGCATTAATGTGGATTATAAATCTACAAGGAAGGAGTCATTTTATGGTATTTGTTTCTG
AAATGACTGGTTGGGTTTGATGAGTCTCGTTCACCAAATGATGCTAATTTATTTTTGCCTATAC
CAGACCTACAGCTTGATGTTAAAGGCTGTCGAGATGTATATGCTTCTTTTGACAAGTATGTTGA
AGTTGAACGGCTTGAAGGTGATAATAAGTATCAGGCTGAGCAATATGGATTGCAGGTAATCTTC
TATTGTAAGCTTCTAAAAGAATACCAGTTGAATGGTTTGTGCATACACTAGAAATAACTTGATT
ACTAGCAACTTTGCCGTCAGTTAGAGCAGTGTTCATTAGTGCAAGAGCTGCATCAGAGGCTGTT
ATTTGGCCAGCATGGACAAAATGTTTAGTTGTTTATTGTAACAAAATGTTGTGTTTTGCAATAT
CTAAATGGCTTTAGCAGTGTTGGTTGGCTCAAGCATTAATTTGTTTTTGGTATGGTGTTCGTGC
ATTATATCTGATTACATGTTACATCTTTTCCCATTTAAATGACTACATTTTGATTTTGGATGAT
GTTATTTCAGGATGCTAAGAAGGGTGTGTTGTTCATTGATTTCCCTCCAGTCCTTCAACTTCAG
CTTAAACGTTTTGAATATGATTTTATGCGAGATACTATGGTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.177756058
Functional Information
Coding potential Y
Potential coding position 5890718-5894069(+)
5893400-5890739(+)
Potential amino acid sequence MLVPHSDLTDNHQPMEVVSQAENANTVENQPVEDPPSSRFTWKIDNFSRLNTKKHYSDVFVVGG
YKWRILIFPKGNNVDHLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNAR
ESDWGFTSFMPLGELYDPCRGYLVNDTFVVEAEVVVRKIVDYWAYDSKKETGYVGLKNQGATCY
MNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDT
YDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQ
LDVKGCRDVYASFDKYVEVERLEGDNKYQAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMR
DTMVKQQEDEEMLVPHSDLTDNHQPMEVVSQAENANTVENQPVEDPPSSRFTWKIDNFSRLNTK
KHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHSKYSI
RKDTQHQFNARESDWGFTSFMPLGELYDPCRGYLVNDTFVVEAEVVVRKIVDYWAYDSKKETGY
VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVAT
KELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYK
STRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEQYGLQDAKKGVLFIDFPPVLQL
QLKRFEYDFMRDTMVKQQEDEEMLVPHSDLTDNHQPMEVVSQAENANTVENQPVEDPPSSRFTW
KIDNFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSASLPYGWSRYAQFSLA
VVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGELYDPCRGYLVNDTFVVEAEVVVRKIVDY
WAYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFY
KLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHM
NYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEQYGLQDAKKGV
LFIDFPPVLQLQLKRFEYDFMRDTMVKQQEDEEMLVPHSDLTDNHQPMEVVSQAENANTVENQP
VEDPPSSRFTWKIDNFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSASLPY
GWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGELYDPCRGYLVNDTFVVE
AEVVVRKIVDYWAYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSG
SIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEG
TIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAE
QYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVK(+)
MWIINLQGRSHFMTYSLMLKAVEMYMLLLTSMLKLNGLKVIISIRLSNMDCRMLRRVCCSLISL
QSFNFSLNVLNMILCEILWSSNRKTRKCSCHTLI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b