Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024587_circ_g.2 |
ID in PlantcircBase | zma_circ_010231 |
Alias | zma_circ_0000179, GRMZM2G086496_C1 |
Organism | Zea mays |
Position | chr10: 79467391-79467995 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d024587 |
Parent gene annotation |
Protein NRT1/ PTR FAMILY 6.3 |
Parent gene strand | + |
Alternative splicing | Zm00001d024587_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d024587_T001:1 |
Conservation Information | |
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Conserved circRNAs | osa_circ_035900 osi_circ_007539 osi_circ_018203 |
PMCS | 0.363408116 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
79467623-79467394(+) 79467936-79467394(+) 79467658-79467823(-) |
Potential amino acid sequence |
MMRFFNWFFFFISLGSLLAVTVLVYVQDNLGRRWGYGACACAIAAGLLVFLAGTRRYRFKKLAG SPLTQIAAVVVAAWRKRRLPLPADPAMLYDVDVGKAAAVEDGSSSKKSKRKERLPHTDQFRA*( +) MGPPARRASARSASPTPTSSGRDDPDDLDGGAGATAGVLLRDRRRRRRGVRAGVGGAAGGAVPG AVPDGAGHGWAKVERVGVRVGPVRRVGRRGEAADDALLQLVLLLHLAGVAAGRHRAGVRPGQPG QALGLRRLRLRHRRGPPRLPGRHTQVPLQEAGRQPPHADRRRRRRRLAQAPPPSPRRPRHALRR RRRQGRRRRGWVLQQEEQAQGAPPPHRPVPGVTILTISTAAPGLRPASCSATGGGVVGECARAS GAQLGVLYLALYLTALGTGGLKSSVSGFGSDQFDESDGGEKRQMMRFFNWFFFFISLGSLLAVT VLVYVQDNLGRRWGYGACACAIAAGLLVFLAGTRRYRFKKLAGSPLTQIAAVVVAAWRKRRLPL PADPAMLYDVDVGKAAAVEDGSSSKKSKRKERLPHTDQFRA*(+) MKKKNQLKKRIICRFSPPSDSSNWSDPNPDTLDFSPPVPSAVRYSARYSTPSCAPDARAHSPTT PPPVAEQDAGRSPGAAVEIVRIVTPGTGRCGGGAPCACSSCWRTHPRRRRPCRRRRRRAWRGRR GEGGGACARRRRRRRRSA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |