Detail information of Csa2G150510_circ_g.4


General Information
CircRNA Name Csa2G150510_circ_g.4
ID in PlantcircBase csa_circ_000983
Alias Chr2:9015093_9019117
Organism Cucumis sativus
Position chrChr2: 9015093-9019117  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa2G150510
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa2G150510_circ_g.1 Csa2G150510_circ_g.2 Csa2G150510_circ_g.3 Csa2G150510_circ_g.5
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa2G150510.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATATGAATGCTGTTACCAACATGAGATTACTTGGTACTGCACCTGATAGCAAAAAAAGCTCA
TTAGGGTCATTTTCTTTGAAGTTTGATATTCACAAGgcaagtgagcgattgcatgagaagatga
caaactttgtttccaaaaataaggctgcacaaattcatcaaggttcaaggttagcgctgttgtg
tttgcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAAGTGAGCGATTGCATGAGAAGATGACAAACTTTGTTTCCAAAAATAAGGCTGCACAAATTC
ATCAAGGTTCAAGGTTAGCGCTGTTGTGTTTGCTTGCTTTTGGGGTGGTGTTATGAATATGAAC
TTGGAAACCTGGCTTTTAGATCACTCATGGATATACTAGAACTGTTTCTCTTTATTGTTTTTTT
TTGAAATGGAAACAAGCAAGATCATGAGACTAAAGCTCAAAGTGCAAGAGTATTATACTAAAGG
AAAAGCTGAGACTTGAACAAAAAATATACTCGGGCAACATAAATATGATGGAAACCTAAAAACA
GACCTGAACAGAAAATTAATGAGCTAATCAAAACCACTCAAAGACAATGCATTAGTAGAAAGCT
AAATACAAAGCATTACTTCAATTCAAATCTTAAATCTTGCACACCAAATCTTCAAAATTAAAGG
AGAAAGAGAAAGCCAAGAAGATGCTTTAGCTGCCTCAAAACTATCTTGCCCATGCAATCCAATG
CCCAGAGGAACTCAAAGCAGTCTTCCAATCCACAAAATCTTGCCAGCACTGCCTTCAACGCATT
ACTCCAGTTGTCAAAGTGAAATCTGCTTTAGCAATGTCAGTCTCTGGAAAAACCTTCATCCCAC
CTTGTAAGAATCCTCCAGAACTCCTTAAAGCTTCCAACTAAAGTCCAGCCAACATCTTTTGAGC
TCTAGATGATTTTTAAGAACTCTGTATCGAAGCTGTCTCTTCTAGATTCTTGAATTAGTACAAT
GTCTGAATTAATTCCTTTAGAAACTTTTAAGAATTAGCCACTTTGTTTCTTGTCCAAATCCTCA
CATAATTCAGTAGCCAATCTTCATTTTTCAACCCTGAAGGATATCTACTGATTGACCTGTTTTC
CTTTGGACTAGGCTATAAGGAGATTTCACAGACTTCCAATATGGAATGTAATTTTCGAGGTATG
TCTTTCTTTTCCAGTGGAGGGGAAGCTTTCCTTGATGGAATGTAACTGAACCTCTTCAGTTTGG
AATATAATACCTAAAGCCTTGTTCATATCGTCCAACATTTCATCTGTATTTTTTATATCCTCAT
CATTTCTCTTTCCAATTCTTCACTGCTTACACTTGCCAATGTCAGTAAGGCGGCCGATCCTCTA
TACATATAAAAGAAAGGGCAGCATGGTCACTAACAGCAAATCAATGATGAAGGAATGATTGGGG
GAAAGATCGTGACAGATGGGGCCCACGGGTAGGAGAGAGTACTATAAATAGGTCTTTATGGAGA
ATGTTGTAGGTAGGGTTTCTTTTTGTGTAAAAGCTGCGGAAAGCTTTAGGAGAGGATTTCCCAG
GCTCCTTGTAAAGGTGCTGGGTATGCTATTGTTATTTCCTTTATATTTCTCTTGTTAAACTTCT
TGTGAACGTTACATTTGGCTGAAGTAATATAAATAACAGAGTGCTGCCTCTGTTTTAGTCCTTT
TGTTAGGATAAATTATATTATTTTGAGTTAGAATCCTAACAGACTCTTCATTGAAGTCTTTTGG
AGCTTAATGAGAAGTTGTCTGAAAAGTGCAATGTATACCTCGCACAGAAGAATTGAAAGACTCT
TGGGAATTACATCCAAAATGGGAACCGGGTTTTATTCAATAAAGGTAAAGAAGCTGACCTGTTT
TGTTCTAGCCCAGGGACTTGGATCTTGACACAACACTCCTCAAGCAAGTTGGGGTTTGTGATTT
TTGTCCCGGAATTGTTAAAAGAAGTCCTTTTCCTGGTGAAGTGTTTTCCGAAAGGCTTAAACAA
ATAAGAACTTCTTCGAGACATTCTAGAAATCTTGTGCTTCTTGTTTCTCTACGTTCATTGATGC
ATGGAAATGTCAGCCGGAAACTTCTGAGGTATTTCAACCATTCTCGTATTTTGAGATGGAGACT
GAAGTTCTTTTTCTAATGAATGGAATGCTATATTCACTTTACTGTTTGATTGGTTGGAAAATAG
CAAGAGTTGGATTCCGAGGCAGAGGAAGAAATGAGAACACGACTGGAAGATGGAGGGTTCTTGA
GTGATTAGTTAATGCTGCTGAGCTGTCTTTTGGGAGGAATAACGGAGTGGACTAACGGAGGAAC
TAGAATAGCCTCTTTTTTAAATTTCCTTTTCGTGCCCTTTTGGATGGAAGCTGAAAGGTTACTT
TGCAGAGAATCATTTCCATCCACATTCTCTTTCCTCATTAATGCTTTTTTGTGTTCACACTCGG
CTGGAAAGGAGCCCCATTTGAGTTCTCCAACGTCTGAGGTTTAATTGGCGCGAGACCAAAGCCC
AATGAATTAAAGGCACAGTTATCTTCTACTAATTTCTCTCCTTTCGCTGGCTGTACAATCTAGC
GATTTTTCTTCTTCTGATAATTCAATTGGAACTGTAGTTTGAAAGGTCCTCAAGAATGGCTGCT
TTATGTTTTTATTGGTTGCAAATATAAAAACCAAGGTCGATGGTTAATGATTGGGTCATGTTAT
TGGTGGCTGGTGCTTTGGTAATTGGTAAGTGTGGCTGGAATAAAGCAAAGTGCTCAACTTTAGA
TATTTTCGACTTCATATTGACGGAGTTTGTTTTTAGATTTAGTTCTCCAGGCTTCATTGATGGA
TCGTTTTGACTAATCTATTGTGTAATTCTATTTTGTTTCTGATACAAGCTAATTGGAAACATAT
TCTCCTATAATTGGTTACGGTCACTGCCATATTTCCTTCTTTTATTTGTTTTTTATTTTTTAAG
AAAAAAACAGTCGTGCTTTGCCTTTTCAACAATTTCATTTCACATTGAACAAACAGGATAAAAG
GGAATTCTTTTTCCTTGTTGAACTTTGGCCTCTAGTTTCTTTTATACTATTGAGTATTGGCCAA
GCATTGGGTACCTGTATGAGATAATTTTTCTGTGGTTTGTTAGCAGTAGTTAAACAAGCATACT
TTACTATGATGTTGCTTTTCTGACCTAAATATTTTCTGCTTTTCTATAGAAATAGTAGTGAACT
CTCCACACGGGATTTGCAAAAGATGGTTCAAGCATTGCCACAATACAGCGAACAAATTGACAAG
CTCTCCCTGCATGTGGAGGTTAGTTTATTGTAGAATTTGGTTTTGTATGTTACTTTTTGACCTA
AATGTTGCATGGTACTTTTCCCCTACCTAGAGCAAACAATCTTAGCTTATAGATAGAGGAGAGT
AGAGGATGGTTTTTAGTTTAATCAGGTTTGGTTTTGTACTGTGGTTCAGAGCTTTGCCGTCTCT
AGAAGCCTTAGAAACTGAAAAATGTTTTGAAAAAGAGCAAAAGGAACCTTCATTTCCTCTTGCT
CAGCAATATGTTCAATATTTGAGGAGTTGGAAGTAACTTCTTAAGATCTTTTGGAACTGACTTT
GAGTTTGTTAATTCAGATTGCAGTAAAACTAAACAAATTCATCAAGGAACAGGGGCTTAGAGAA
CTAGGACAAATTGAGCAGGATCTGGTTTTTGGAGATGCAGGAACAAAGGATGTAATAAAATTTT
TGACGACCAATGAGGTGATTACTGAAACTATATTAATGTTCTCAAGTACATGTCAATGGAGATA
TGAATATGAAAGATACTTTGAACATCTTGGCAGGATGCAAGTCGTGAAAATAAGTTACGGTTAT
TGATGATTCTTGCAGCCATTTATCCTGAGAAATTCGAGGGTGAGAAAGGTCAAAATTTAATGAA
GGTTAGTAGTTTGACCCACTGCCGAGAAGGAAAGGACAACCTTTCCAACAAACCAGCTATTTAA
TTAATTAAGTTGTTTATCATATGAAATATTTCTTAACAAAGATATTGTTGTCCTGTACTAGAAA
AACAAAGATATTGCTGTTTTTTATTCTTCTTACTTCACATCTTGACAATGTTTAATGCTTGGCA
GTTAGCAAAACTACCACCAGAGGATATGAATGCTGTTACCAACATGAGATTACTTGGTACTGCA
CCTGATAGCAAAAAAAGCTCATTAGGGTCATTTTCTTTGAAGTTTGATATTCACAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.101933244
Functional Information
Coding potential Y
Potential coding position 9015118-9019114(+)
Potential amino acid sequence MTNFVSKNKAAQIHQGSRNSSELSTRDLQKMVQALPQYSEQIDKLSLHVEIAVKLNKFIKEQGL
RELGQIEQDLVFGDAGTKDVIKFLTTNEDASRENKLRLLMILAAIYPEKFEGEKGQNLMKLAKL
PPEDMNAVTNMRLLGTAPDSKKSSLGSFSLKFDIHKASERLHEKMTNFVSKNKAAQIHQGSRNS
SELSTRDLQKMVQALPQYSEQIDKLSLHVEIAVKLNKFIKEQGLRELGQIEQDLVFGDAGTKDV
IKFLTTNEDASRENKLRLLMILAAIYPEKFEGEKGQNLMKLAKLPPEDMNAVTNMRLLGTAPDS
KKSSLGSFSLKFDIHKASERLHEKMTNFVSKNKAAQIHQGSRNSSELSTRDLQKMVQALPQYSE
QIDKLSLHVEIAVKLNKFIKEQGLRELGQIEQDLVFGDAGTKDVIKFLTTNEDASRENKLRLLM
ILAAIYPEKFEGEKGQNLMKLAKLPPEDMNAVTNMRLLGTAPDSKKSSLGSFSLKFDIHKASER
LHEKMTNFVSKNKAAQIHQGSRNSSELSTRDLQKMVQALPQYSEQIDKLSLHVEIAVKLNKFIK
EQGLRELGQIEQDLVFGDAGTKDVIKFLTTNEDASRENKLRLLMILAAIYPEKFEGEKGQNLMK
LAKLPPEDMNAVTNMRLLGTAPDSKKSSLGSFSLKFDIHK
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019