Plant Circular RNA Database

Detail information of 5_circ_ag.4

			
						 General Information
					
						CircRNA Name
						5_circ_ag.4
					
						ID in PlantcircBase
						ath_circ_037536
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 3553679-3567501  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRI, find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT5G11170_circ_g.1 5_circ_ag.2 5_circ_ag.3 5_circ_ag.5 AT5G11170_circ_g.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 AT5G11170_circ_g.11 5_circ_ag.12 5_circ_ag.13 AT5G11170_circ_g.14 5_circ_ag.15 5_circ_ag.16 5_circ_ag.17 AT5G11170_circ_g.18 5_circ_ag.19 5_circ_ag.20 AT5G11200_circ_g.1 AT5G11200_circ_g.2 AT5G11200_circ_g.3 AT5G11200_circ_g.4 AT5G11200_circ_g.5 						
					
						Support reads
						204
					
						Tissues
						root, aerial, inflorescences, seed, whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.4
ID in PlantcircBase	ath_circ_037536
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 3553679-3567501 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	CIRI, find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT5G11170_circ_g.1 5_circ_ag.2 5_circ_ag.3 5_circ_ag.5 AT5G11170_circ_g.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 AT5G11170_circ_g.11 5_circ_ag.12 5_circ_ag.13 AT5G11170_circ_g.14 5_circ_ag.15 5_circ_ag.16 5_circ_ag.17 AT5G11170_circ_g.18 5_circ_ag.19 5_circ_ag.20 AT5G11200_circ_g.1 AT5G11200_circ_g.2 AT5G11200_circ_g.3 AT5G11200_circ_g.4 AT5G11200_circ_g.5
Support reads	204
Tissues	root, aerial, inflorescences, seed, whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAGACAACGAAGCCTACGAGGAGGAGCTCTTGGACTATGAAGAAGAAGACGAGAAGGTCCCAGA
TTCTGGAAACAAAGTTAACGGCGAAGCTGTGAAAAAagggtacgtgggaatacacagttctgga
ttcagagacttccttttaaaaccggagcttctcagagctattgttgactctggatttgaacatc
catctgaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1648
Transcript exons: 3553679-3553799,3554099-3554409,3554506-3554746,3554819-
3555002,3555617-3555680,3555770-3555959,3556064-3556212,
3556300-3556387,3556476-3556542,3567269-3567501
AGGGTACGTGGGAATACACAGTTCTGGATTCAGAGACTTCCTTTTAAAACCGGAGCTTCTCAGA
GCTATTGTTGACTCTGGATTTGAACATCCATCTGAAGGTTATTACAATGAAATACACAGGTAAT
AAACGATATTTCAATCTATTGGTTTGGAGTGAGCTTAAACATGTGCTAAAGCCACCAATTTAAA
AGATATGGAGGTTATCATCTACTTATAAAGGCTTTCTTCGGTACAATTTTCTTTGGTTCTCCAC
CAGTGCAACATGAATGTATCCCTCAAGCTATCTTGGGCATGGATGTCATCTGCCAAGCAAAGTC
TGGTATGGGGAAGACTGCTGTGTTTGTCCTGTCTACTCTACAACAGATTGAACCATCTCCTGGC
CAGGTTTCTGCACTTGTCTTGTGCCATACAAGAGAGCTAGCTTACCAGCAGATCTGCAATGAGT
TTGTGCGATTCAGTACCTATCTGCCTGATACAAAGGTTTCGGTGTTCTATGGTGGAGTCAACAT
TAAAATTCACAAAGACTTGCTGAAGAATGAATGTCCTCACATTGTTGTTGGTACCCCTGGTCGG
GTGCTTGCACTTGCCAGGGAGAAAGATCTCTCTTTGAAGAATGTGAGGCATTTTATTCTTGATG
AATGTGATAAAATGCTCGAGTCACTTGGTATGCAGACATGCGAAGGGATGTGCAGGAGATTTTC
AAGATGACTCCTCATGACAAACAAGTAATGATGTTCTCAGCAACGCTCAGCAAAGAGATACGCC
CAGTCTGCAAAAAATTTATGCAAGATGTAATGTTCCATGGCCAATTCTCTCTCCCTTTGCAAGT
CTTCTAGTTTTCAACTATTTTTAGCCTTTCAGCCAATGGAAATATATGTCGATGATGAAGCCAA
GTTGACTCTTCATGGGCTTGTCCAGCAGCACTATATCAAACTGAGCGAGATGGAGAAAAACCGG
AAGTTGAATGACCTTCTTGATGCGTTGGACTTCAATCAAGTTGTCATTTTTGTGAAGAGCGTGA
GCAGGGCTGCTGAGCTGAACAAGTTACTGGTGGAATGCAATTTCCCCTCAATATGCATCCACTC
TGGAATGTCTCAAGAAGAGAGGTAGGTTGACTCGATACAAAAGTTTCAAGGAAGGGCACAAAAG
GATCCTTGTGGCGACTGACTTGGTAGGAAGAGGGATTGACATTGAGCGTGTCAACATTGTCATC
AACTATGACATGCCAGATTCTGCTGATACCTATCTTCACAGGGTGGTTGGCAGAGCTGGTAGAT
TTGGAACCAAGGGTCTTGCAATCACATTTGTTGCATCTGCTTCAGATTCAGAGGTTCTTAACCA
GGTACAGGTACAAGAGAGGTTTGAGGTTGATATAAAGGAACTTCCGGAGCAGATTGATACTTCA
ACCTACAAGAACTCAATTGCTTATCCAAAGTTCCAACTGAAGATGCTTTCCTACTGAATCTTAG
GTTAATGTTTTGGATTTGGAATCTTACCCGAAATTTCTCTGCAGCTTGTTGAATTTGCGAAGTA
TGGGAGACGCTAGAGACAACGAAGCCTACGAGGAGGAGCTCTTGGACTATGAAGAAGAAGACGA
GAAGGTCCCAGATTCTGGAAACAAAGTTAACGGCGAAGCTGTGAAAAA
Transcript length: 1706
Transcript exons: 3553679-3553824,3554099-3554409,3554506-3554746,3554819-
3555043,3555614-3555680,3555770-3555959,3556064-3556212,
3556300-3556541,3567367-3567501
AGGGTACGTGGGAATACACAGTTCTGGATTCAGAGACTTCCTTTTAAAACCGGAGCTTCTCAGA
GCTATTGTTGACTCTGGATTTGAACATCCATCTGAAGGTTATTACAATGAAATACACCCTACCT
TTGACTTTTCTGCCTTGCAGGTAATAAACGATATTTCAATCTATTGGTTTGGAGTGAGCTTAAA
CATGTGCTAAAGCCACCAATTTAAAAGATATGGAGGTTATCATCTACTTATAAAGGCTTTCTTC
GGTACAATTTTCTTTGGTTCTCCACCAGTGCAACATGAATGTATCCCTCAAGCTATCTTGGGCA
TGGATGTCATCTGCCAAGCAAAGTCTGGTATGGGGAAGACTGCTGTGTTTGTCCTGTCTACTCT
ACAACAGATTGAACCATCTCCTGGCCAGGTTTCTGCACTTGTCTTGTGCCATACAAGAGAGCTA
GCTTACCAGCAGATCTGCAATGAGTTTGTGCGATTCAGTACCTATCTGCCTGATACAAAGGTTT
CGGTGTTCTATGGTGGAGTCAACATTAAAATTCACAAAGACTTGCTGAAGAATGAATGTCCTCA
CATTGTTGTTGGTACCCCTGGTCGGGTGCTTGCACTTGCCAGGGAGAAAGATCTCTCTTTGAAG
AATGTGAGGCATTTTATTCTTGATGAATGTGATAAAATGCTCGAGTCACTTGGTATGCAGACAT
GCGAAGGGATGTGCAGGAGATTTTCAAGATGACTCCTCATGACAAACAAGTAATGATGTTCTCA
GCAACGCTCAGCAAAGAGATACGCCCAGTCTGCAAAAAATTTATGCAAGATGTAATGTTCCATG
GCCAATTCTCTCTCCCTTTGCAAGTCTTCTAGTTTTCAACTATTTTTAGCCTTCTATGAGTGAT
CATAGCATTAGTTGAGCGTCTTCTGCGTTCCTTTCAGCCAATGGAAATATATGTCGATGATGAA
GCCAAGTTGACTCTTCATGGGCTTGTCCAGCAGCACTATATCAAACTGAGCGAGATGGAGAAAA
ACCGGAAGTTGAATGACCTTCTTGATGCGTTGGACTTCAATCAAGTTGTCATTTTTGTGAAGAG
CGTGAGCAGGGCTGCTGAGCTGAACAAGTTACTGGTGGAATGCAATTTCCCCTCAATATGCATC
CACTCTGGAATGTCTCAAGAAGAGAGGTAGGTTGACTCGATACAAAAGTTTCAAGGAAGGGCAC
AAAAGGATCCTTGTGGCGACTGACTTGGTAGGAAGAGGGATTGACATTGAGCGTGTCAACATTG
TCATCAACTATGACATGCCAGATTCTGCTGATACCTATCTTCACAGGGTGGTTGGCAGAGCTGG
TAGATTTGGAACCAAGGGTCTTGCAATCACATTTGTTGCATCTGCTTCAGATTCAGAGGTTCTT
AACCAGGTATGGTGTTCAATCTTTGTAATAAGTCCACGGAAAACTCCTCTTGAAATTGAGTTGG
ATATTTAGTAAAGTGGCAATTATAAATCTTGGACAGGTACAAGAGAGGTTTGAGGTTGATATAA
AGGAACTTCCGGAGCAGATTGATACTTCAACCTACCAGCTTGTTGAATTTGCGAAGTATGGGAG
ACGCTAGAGACAACGAAGCCTACGAGGAGGAGCTCTTGGACTATGAAGAAGAAGACGAGAAGGT
CCCAGATTCTGGAAACAAAGTTAACGGCGAAGCTGTGAAAAA
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	GAGACAACGAAGCCTACGAGGAGGAGCTCTTGGACTATGAAGAAGAAGACGAGAAGGTCCCAGA TTCTGGAAACAAAGTTAACGGCGAAGCTGTGAAAAAagggtacgtgggaatacacagttctgga ttcagagacttccttttaaaaccggagcttctcagagctattgttgactctggatttgaacatc catctgaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1648 Transcript exons: 3553679-3553799,3554099-3554409,3554506-3554746,3554819- 3555002,3555617-3555680,3555770-3555959,3556064-3556212, 3556300-3556387,3556476-3556542,3567269-3567501 AGGGTACGTGGGAATACACAGTTCTGGATTCAGAGACTTCCTTTTAAAACCGGAGCTTCTCAGA GCTATTGTTGACTCTGGATTTGAACATCCATCTGAAGGTTATTACAATGAAATACACAGGTAAT AAACGATATTTCAATCTATTGGTTTGGAGTGAGCTTAAACATGTGCTAAAGCCACCAATTTAAA AGATATGGAGGTTATCATCTACTTATAAAGGCTTTCTTCGGTACAATTTTCTTTGGTTCTCCAC CAGTGCAACATGAATGTATCCCTCAAGCTATCTTGGGCATGGATGTCATCTGCCAAGCAAAGTC TGGTATGGGGAAGACTGCTGTGTTTGTCCTGTCTACTCTACAACAGATTGAACCATCTCCTGGC CAGGTTTCTGCACTTGTCTTGTGCCATACAAGAGAGCTAGCTTACCAGCAGATCTGCAATGAGT TTGTGCGATTCAGTACCTATCTGCCTGATACAAAGGTTTCGGTGTTCTATGGTGGAGTCAACAT TAAAATTCACAAAGACTTGCTGAAGAATGAATGTCCTCACATTGTTGTTGGTACCCCTGGTCGG GTGCTTGCACTTGCCAGGGAGAAAGATCTCTCTTTGAAGAATGTGAGGCATTTTATTCTTGATG AATGTGATAAAATGCTCGAGTCACTTGGTATGCAGACATGCGAAGGGATGTGCAGGAGATTTTC AAGATGACTCCTCATGACAAACAAGTAATGATGTTCTCAGCAACGCTCAGCAAAGAGATACGCC CAGTCTGCAAAAAATTTATGCAAGATGTAATGTTCCATGGCCAATTCTCTCTCCCTTTGCAAGT CTTCTAGTTTTCAACTATTTTTAGCCTTTCAGCCAATGGAAATATATGTCGATGATGAAGCCAA GTTGACTCTTCATGGGCTTGTCCAGCAGCACTATATCAAACTGAGCGAGATGGAGAAAAACCGG AAGTTGAATGACCTTCTTGATGCGTTGGACTTCAATCAAGTTGTCATTTTTGTGAAGAGCGTGA GCAGGGCTGCTGAGCTGAACAAGTTACTGGTGGAATGCAATTTCCCCTCAATATGCATCCACTC TGGAATGTCTCAAGAAGAGAGGTAGGTTGACTCGATACAAAAGTTTCAAGGAAGGGCACAAAAG GATCCTTGTGGCGACTGACTTGGTAGGAAGAGGGATTGACATTGAGCGTGTCAACATTGTCATC AACTATGACATGCCAGATTCTGCTGATACCTATCTTCACAGGGTGGTTGGCAGAGCTGGTAGAT TTGGAACCAAGGGTCTTGCAATCACATTTGTTGCATCTGCTTCAGATTCAGAGGTTCTTAACCA GGTACAGGTACAAGAGAGGTTTGAGGTTGATATAAAGGAACTTCCGGAGCAGATTGATACTTCA ACCTACAAGAACTCAATTGCTTATCCAAAGTTCCAACTGAAGATGCTTTCCTACTGAATCTTAG GTTAATGTTTTGGATTTGGAATCTTACCCGAAATTTCTCTGCAGCTTGTTGAATTTGCGAAGTA TGGGAGACGCTAGAGACAACGAAGCCTACGAGGAGGAGCTCTTGGACTATGAAGAAGAAGACGA GAAGGTCCCAGATTCTGGAAACAAAGTTAACGGCGAAGCTGTGAAAAA Transcript length: 1706 Transcript exons: 3553679-3553824,3554099-3554409,3554506-3554746,3554819- 3555043,3555614-3555680,3555770-3555959,3556064-3556212, 3556300-3556541,3567367-3567501 AGGGTACGTGGGAATACACAGTTCTGGATTCAGAGACTTCCTTTTAAAACCGGAGCTTCTCAGA GCTATTGTTGACTCTGGATTTGAACATCCATCTGAAGGTTATTACAATGAAATACACCCTACCT TTGACTTTTCTGCCTTGCAGGTAATAAACGATATTTCAATCTATTGGTTTGGAGTGAGCTTAAA CATGTGCTAAAGCCACCAATTTAAAAGATATGGAGGTTATCATCTACTTATAAAGGCTTTCTTC GGTACAATTTTCTTTGGTTCTCCACCAGTGCAACATGAATGTATCCCTCAAGCTATCTTGGGCA TGGATGTCATCTGCCAAGCAAAGTCTGGTATGGGGAAGACTGCTGTGTTTGTCCTGTCTACTCT ACAACAGATTGAACCATCTCCTGGCCAGGTTTCTGCACTTGTCTTGTGCCATACAAGAGAGCTA GCTTACCAGCAGATCTGCAATGAGTTTGTGCGATTCAGTACCTATCTGCCTGATACAAAGGTTT CGGTGTTCTATGGTGGAGTCAACATTAAAATTCACAAAGACTTGCTGAAGAATGAATGTCCTCA CATTGTTGTTGGTACCCCTGGTCGGGTGCTTGCACTTGCCAGGGAGAAAGATCTCTCTTTGAAG AATGTGAGGCATTTTATTCTTGATGAATGTGATAAAATGCTCGAGTCACTTGGTATGCAGACAT GCGAAGGGATGTGCAGGAGATTTTCAAGATGACTCCTCATGACAAACAAGTAATGATGTTCTCA GCAACGCTCAGCAAAGAGATACGCCCAGTCTGCAAAAAATTTATGCAAGATGTAATGTTCCATG GCCAATTCTCTCTCCCTTTGCAAGTCTTCTAGTTTTCAACTATTTTTAGCCTTCTATGAGTGAT CATAGCATTAGTTGAGCGTCTTCTGCGTTCCTTTCAGCCAATGGAAATATATGTCGATGATGAA GCCAAGTTGACTCTTCATGGGCTTGTCCAGCAGCACTATATCAAACTGAGCGAGATGGAGAAAA ACCGGAAGTTGAATGACCTTCTTGATGCGTTGGACTTCAATCAAGTTGTCATTTTTGTGAAGAG CGTGAGCAGGGCTGCTGAGCTGAACAAGTTACTGGTGGAATGCAATTTCCCCTCAATATGCATC CACTCTGGAATGTCTCAAGAAGAGAGGTAGGTTGACTCGATACAAAAGTTTCAAGGAAGGGCAC AAAAGGATCCTTGTGGCGACTGACTTGGTAGGAAGAGGGATTGACATTGAGCGTGTCAACATTG TCATCAACTATGACATGCCAGATTCTGCTGATACCTATCTTCACAGGGTGGTTGGCAGAGCTGG TAGATTTGGAACCAAGGGTCTTGCAATCACATTTGTTGCATCTGCTTCAGATTCAGAGGTTCTT AACCAGGTATGGTGTTCAATCTTTGTAATAAGTCCACGGAAAACTCCTCTTGAAATTGAGTTGG ATATTTAGTAAAGTGGCAATTATAAATCTTGGACAGGTACAAGAGAGGTTTGAGGTTGATATAA AGGAACTTCCGGAGCAGATTGATACTTCAACCTACCAGCTTGTTGAATTTGCGAAGTATGGGAG ACGCTAGAGACAACGAAGCCTACGAGGAGGAGCTCTTGGACTATGAAGAAGAAGACGAGAAGGT CCCAGATTCTGGAAACAAAGTTAACGGCGAAGCTGTGAAAAA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						1.076349313

Conservation Information
Conserved circRNAs	NA
PMCS	1.076349313

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of 5_circ_ag.4

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