Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d036827_circ_g.3 |
ID in PlantcircBase | zma_circ_008980 |
Alias | Zm06circ00035, zma_circ_0002116, GRMZM2G112337_C1 |
Organism | Zea mays |
Position | chr6: 102936290-102937281 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d036827 |
Parent gene annotation |
Microtubule-associated protein MAP65-1a |
Parent gene strand | - |
Alternative splicing | Zm00001d036827_circ_g.1 Zm00001d036827_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d036827_T003:2 Zm00001d036827_T002:2 Zm00001d036827_T001:2 Zm00001d036827_T004:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.23203475 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
102937238-102936292(-) |
Potential amino acid sequence |
MLLQLEQECLDVYRRKVDQASSSRSCLLQQLSNSKSELTRLLSALGESSISGAPDKTSGTIKEQ LAAISPSLETLRRKKESRVKEFAHVQLQIQILRDEIAGDLHIGEQLETPHVNADDLSVRRLNEY LSELQALQKEKLIWDEVGESDEDRDKMLLQLEQECLDVYRRKVDQASSSRSCLLQQLSNSKSEL TRLLSALGESSISGAPDKTSGTIKEQLAAISPSLETLRRKKESRVKEFAHVQLQIQILRDEIAG DLHIGEQLETPHVNADDLSVRRLNEYLSELQALQKEKLIWDEVGESDEDRDKMLLQLEQECLDV YRRKVDQASSSRSCLLQQLSNSKSELTRLLSALGESSISGAPDKTSGTIKEQLAAISPSLETLR RKKESRVKEFAHVQLQIQILRDEIAGDLHIGEQLETPHVNADDLSVRRLNEYLSELQALQKEKL IWDEVGESDEDRDKMLLQLEQECLDVYRRKVDQASSSRSCLLQQLSNSKSELTRLLSALGESSI SGAPDKTSGTIKEQLAAISPSLETLRRKKESRVKEFAHVQLQIQILRDEIAGDLHIGEQLETPH VNADDLSVRRLNEYLSELQALQKEK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |