Detail information of BGIOSGA014789_circ_g.1


General Information
CircRNA Name BGIOSGA014789_circ_g.1
ID in PlantcircBase osi_circ_014524
Alias Chr04:25528657_25529076(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23522896-23523315  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014789
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA014789-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTGGAACTTCCCAGTTATCATTATCTAACCCAGGCATTCCAGGCATCTTTCTTGATCCAGGCA
TACCAGGTGTTCCAGGCATCCCAGGCATCATCCCTCccgtcttcttctgaactgcagctggcat
ctcatgggaagaaccggctgctttgtctgtgacaggcacaacagctggagctgcacttacaggt
tttggtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGTCTTCTTCTGAACTGCAGCTGGCATCTCATGGGAAGAACCGGCTGCTTTGTCTGTGACAGG
CACAACAGCTGGAGCTGCACTTACAGGTTTTGGTGATGGTGCAGTTTGAGCTGGTGTATGAGTG
GGACTAGCCATAAGGCTGGAAGGGCGAGATGGTGGACCACCACTGCCCAAAAGAGCACTCTTAC
CAATTAGTGCTCCACTTCCATGAGGAAGAAGCCTGGAGTTAATAGATGATGGCTTGTTAATAGA
TGATGGCTTATTAAGCAACGGACCCTGGTTACGAAGAGAGTCGCCTCTTGGCATTGATTTAGAA
CGTGGAACTTCCCAGTTATCATTATCTAACCCAGGCATTCCAGGCATCTTTCTTGATCCAGGCA
TACCAGGTGTTCCAGGCATCCCAGGCATCATCCCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021