Detail information of Os08g0404200_circ_ag.2


General Information
CircRNA Name Os08g0404200_circ_ag.2
ID in PlantcircBase osa_circ_037015
Alias NA
Organism Oryza sativa
Position chr8: 19305291-19310219  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os08g0404300_circ_igg.1 EPlOSAG00000046049_circ_ig.1 Os08g0404200_circ_ag.1 Os08g0404300_circ_igg.3
Support reads 2
Tissues anther
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTTTAAGCGTTGGGCCACCAAAAAGACAGCTGGATCAACAAAAAATGGCCGTGACTCTAAC
CCTAAGTATTTGGGTGTTAAAAAGTTTGGCGGAGAGaaagtggagccaggaaacatcatcatcc
gccaaagaggaacccgcttccatcctgggaactacgttggcatggggaaggaccatactctctt
ctgtctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAGTGGAGCCAGGAAACATCATCATCCGCCAAAGAGGAACCCGCTTCCATCCTGGGAACTACG
TTGGCATGGGGAAGGACCATACTCTCTTCTGTCTGAAAGAAGGACATGTGCGATTCGAGCGCAA
CAAGCTGACTGGCAGGAAATGGGTTCATGTTGATCCTGTTGCTGGGCATGTGCTCCACCCTGTC
TACGCCAGTGATTCGACCCCTGCAGCTGAAATGGAGCCATTGTAATGGCTTTACATGGAATGAA
GTAACATATGTTGCTGACAGCTTTCGTCCTTGCCTTGAGAGTGACTTCTCTAAAGAAACTTATT
GCGATTAAGAGGCTTCTGGGTTGAATTTGCTTGCAATAAGGAACCTAACCATCATGTTTAGAAC
CCTTTTGTTTTTGGTTCTTGCTGTGGCTTAAAGTTGTTTGTTTTAAGTATCCTTTGTGATTTGT
GGCATGAAGGTTGACAAACCTACATGATTTATGAACACACAGAAATTCTAAAAATGTTGCTTGG
GCCGGGAAAGTCAAGATGCTTATTTTTCTTCGAAATACCTATGGAATAACCTATGTCACGGGAA
TTTGAGAGAACTACTTTGTAGGAGGGTTAATCCTTTGGCTTCAAGAGTTTCACATGATTGTTTT
TCATATATGATTTAAAATATTCTGCAATACGTAGGATTTTCATTCGAATTGATTCAGTTTCTGC
AAAAGTCATCTAGAATTCGTTTGGTTCAAATGAAGTATTTCTTTGTTGCAATACATACTCTTCC
CGCCCAATCACCCAATGATCCAAAGGAATATATGTGTGAGCACTTCCTTTATTGAAGTATAGTA
TCGGTTGTTTTAATTCCAACTCTTCACATTTTGGAATCTACCCTGGAAATGGCTATTTTGAAAG
TTTTACTACTATTTTATTGTCATGTTATAACATTACATAGAGTTAATTTATCGGTCACTCCATC
ATCTTTTTAATAAGTTTTTTTGAAAGCTAATACTTAATTACCTGTGCATTACTCTATCGCTTCA
TTCTGTATGTAGTGGAAGTGTTCTCTACCCAAAATGATATAAGTACGTCTTAAAACGCCATAGA
AAAACTGGTTATCTTTATTACAACCCAATCTTTTTGCTTTTGCTTATACTTATAAGCCAAAATT
TAAATTTTCAACCTTAAATTTGGAGTTGATTTTGGGGTTTTTCATCAAAGTTTATTTTTTATTT
TTTGCTTTTAGATCACTAAGGCCCTGTTCGTTTCTTATGTAAGGAGAGGGTTAAATTGTGAATA
CTCGTGGCACGCTTTTAAAACTGCTAAACGATGCGTTTCGTGCGAAAACTTTCTATATGAAAGT
TGCTCTAAAATATTAGATTAATCTATTTCTTAAGTTTATATAATAATTAAAACTCAATTAATCA
CATATTATTACCACATCGTTTTGCGTGAAACACTTAATCTTTATCTTCATCTTCATCTTCAGGA
GATTCAAACACCACCTAGAAACACATATATAAAAGTTTTGTTCACAAATTATTTTTCGTTTGCA
AATATGCAATTTTGCTTAGGCTGTGTTTAGTTCATCGCAAAGTTTAGATTTTGGTTGAAATTAG
AGATGATGTGACTGAAAAGTTATGTGTGTATGACAAGTTGATATGATGGAAAATGACTGAAGTT
TGGATCCAAACTTTGGATCTAAACACAGCCTTAATCCCCAAATAAGCCAAACGATGGGGGCCTT
AGTTTGTTCAACGTGTTAAAATTAAAAAATATATTTACACAACTATAAACATAAGCAAACACAC
ACACACCACGTTAAAATTCCGAGAGAGAGAGAACCGATGCGAAAAGAGCGATCCCCTCCCGCGT
CTTTCAAACGGAGCCCGCGCCCCGGATTCCCCTCCATTCCCGGGGGTTTCCAGATTCCCAGCGA
GGGAAAAAGCAAGCAAAAAAAAAAAAAAAAAAAAAACGGAGGCGAGCGCGAGCGCTGCGCATCC
CAGATGGACGGCGGATCGGGTGCCAGCGCCACCCGCCTCGCCGAATCCGGGCCGTCCATTCCTC
CGCTCGGTCGGGCGCCCCGTTAAGCCTGAGCCCCACCCACCCCCCACCCCCGAACCCTCGCCCT
CCTCACCCCGCGCACCCCCTCCACCTCGCCGCCGCCGCCGACTCGCCGGGGCTCGCCGCCACCG
GTGGTGGGGGGGAGCTCGACCTCCTCGCCCCACGCGCGCATCCGGACGCCGTCGTTCTGGGCGC
GGGAGAGATCCGTCCGTCGCCCCCCGCTGGGCTTGCGCCATCCTCTCGCCGGGTAAGCCCTAGG
TTTTTTTTTTTTTTTGGTCCGATCGATTCCGCCGCGCTCCTAGCCGCGGGTGAGGCAGGAATCG
GGGTGGTTGCGGGGGGCTCGTCGTGCGGTCGAGGGATTTGGTTGTTCCTAGTAGGAGGGGTTGT
ACTTGTTCATCCCGTCGATCCAGTGGAGGCGCGTGGGAGATCTCGGTTGGGGGTTTCCGTGGGC
TCCGTGGGTTGCCGCTCGCGGTGCAGCGGCGGGATGTGGATGGGGATGGGGATGGCGTGGTGGG
CCGTAGGTGCGAGCAACCCTAGACGGATTTTTTTTTTGTGGCCATTTTAGGGTTTACGGGAATG
GATTTTTTTTTTACCGAACAAGAGATGTACTCTGAAAATTGCTGTCTTTTCGTAGCGAGGGGCC
TATAGGATCATTGAAGCCTTAGGGACTTAGGGTTTGGGCTGCTTGCAGCTGTATTTCTCATTTG
TAAACATTAGACTTCCGTGTCTGCTGTGGGAGGATGAAAGAATTGACTTGGGAGCTGAGTTCTA
TTAGGTTCACTGGTTTTGTGGAGTAATGTTTGGAAATAATCTGAGGGAGTATAAGGCTGCTCCA
TCGCAGTGCCACGTGTAGCATTCGGTTCGAATTTTTCATTTGTGTAATGTTTCTTAGCAGTTAC
TTTTTATTTTGGAAGTTGGTTCTCCCAAAAAACTTGTGTCCTATCTGGTTTATTTGAAGGTATC
TTAGGACAACAAGACGATTAGATGCAAAAGTTGAAAGTAGGGGCATTAACATAAACCTTGTTGG
GTGCAGAATATGGTAATTTTATACGTATTAATTGCGTACGTACCGTTTCCACAAAATTGTTCAT
GTAGTAATAAATAACTGCCAAAGAAAGCTGATGTGACTCCATGAATGAATGTATACTACGCTAT
ATCTGCTGTATTGATTGCTGTAGCAATCCATTCGTTTTCAGTATTGTGCTGGTGCATTGTTTGC
AAAAGCAAATCATATTTATTAATTTTTCATTATTGAGTTGCAGCTTGCAAATGTGTATGTATGT
ACATATTGTGAGAGAAAGTAGGCATGTCTGAACTCTCAACATGATTATTGTCATAAGAAAAATG
TTATCGTTGTTTTTCTCTCTTTTTGGGTAACTGTTTGTGTTTATGGTTATAAGTTCTATATTAT
AAATTTGTTCAGGCTGGAATTAGGCTGACCAAATCCTTGTTTTGAAATTCGAATTATATTGATA
TATATCTTGTACGGTCATTGCATTTTTTATTGTTTTGCTTTATAACTATATATAGGCTGGCTTC
ATTACGTACTCCCTCCGTCCCAAAAAAACTTAACCTAGGCAAGGATGTGACATCTCCTAGCACA
ATAAATCTGGACAGTCCTTTGTCCAGATTCGTTGTACTAGAAAATGTCACATCCCTTCCTAGGT
TTAGTTTTTTTGGGACGGAGGGAGTAAACTTGTCTATGTTAAAGTTTGGAATATCCAAAGGTCC
TCAACCTAGTATGTACTATTTTCTTGACCTTAACATGGAACTATACATGACCTTTTTTTTTCCT
ATTTTACTGAATAAGATGATTGTTTGTTTGCGGTTTCCTAAATGTACTTAACTGTTGGTATTGT
TGTGAAGATGTGACGGAATTAGTATTGTGGTATTACATCTATGTCGTAGACAGCTTTTTGGGTT
TGCAGGAATGAAGTACATAAATATCTGTTTGGTGCTGTGGTACAACAATGTAAATAGTTTATTG
CAGTGACAATGTTGCACTGTTGCATGCATTTTTGTTAGGATCATGGTTGTCTGTTGCCTTGTTA
TGCCATTAACAAATCTAGAATAAGTGAAGCAGCTTAAAGTTATGTTCTCGTGCTCTTAAGAGCA
AACATTTAAGAGGTATAATAGCATTCTGTGTTCAAACTATATTTTAGAACCTTTGCCCTTGCTT
AAATAGTTTTATTTATAAGAGATGTTGAGGAGCAAACACTGCATATCTTTACACTTCACATACG
AATATACTTTGTGCTTTGCTGCCTGGATTACTGCATCTACTTTTTTGTTAAATTCAATTTCTTG
CATAAAATGGGGATAAGTTAACTGAGAGCTTCAGTAGACTAGTACATCACAACCTAGGTAATTG
GAAGAATTAGCTACTATGATTCTTTGTTGAAACTTAGGTTTAGTAAAATAGAGTAACCAGATAA
TAGGTTCTATCAAATGGAAACTGGAGAAGGTACTTCCATAGTCGTATCATTGTTAATTTCACCC
TCAGTATAATATTAGTGTTGAATATATGAAAGTTTGCTTTCGATGATTTCAGGTGATTTGAGAC
AATCAAGATGGCTTTTTCATCAGTTTTCAGGAGAGGAAATGTCAAAGAATTGATCTCAAATGTT
TCGGTCTACACTAGCGCAGCAGGTAATGGCTTTGGCTTTAGGCAGTCTGAGACTCTTGACTGAC
TTGAGTCTGTATTTGTGCTATTTTGAATAAGGTGCTTGGCTGTTTGAATGACAAAATATACCTC
ATTGCAGAGTCATCTGGAGGATTGAGCTTGATTTTTAAGCGTTGGGCCACCAAAAAGACAGCTG
GATCAACAAAAAATGGCCGTGACTCTAACCCTAAGTATTTGGGTGTTAAAAAGTTTGGCGGAGA
G
Conservation Information
Conserved circRNAs NA
PMCS 1.073620974
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017