Detail information of Os11g0217500_circ_g.12


General Information
CircRNA Name Os11g0217500_circ_g.12
ID in PlantcircBase osa_circ_008879
Alias NA
Organism Oryza sativa
Position chr11: 6123031-6123987  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os11g0217500
Parent gene annotation Similar to mRNA capping enzyme, C-terminal domain containing pro
tein, expressed. (Os11t0217500-01)
Parent gene strand -
Alternative splicing Os11g0217500_circ_g.1 Os11g0217500_circ_g.2 Os11g0217500_circ_g.3 Os11g0217500_circ_g.4 Os11g0217500_circ_g.5 Os11g0217500_circ_g.6 Os11g0217500_circ_g.7 Os11g0217500_circ_g.8 Os11g0217500_circ_g.9 Os11g0217500_circ_g.10 Os11g0217500_circ_g.11 Os11g0217500_circ_g.13
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0217500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATCTTCCTCAGGCAATGGTGAGGCATTTAAATCCATTGAGAAGGTCATTCAACATCCACTA
CTTCATATATCCTCAATAACGTTTTGAGATTTGCACttcacgaccagcttttctttgtttatta
actacttgtttggaagaatatcttttcccaggaggcaccaagtcattgaatgtttcatcaagag
gaaccttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCACGACCAGCTTTTCTTTGTTTATTAACTACTTGTTTGGAAGAATATCTTTTCCCAGGAGGC
ACCAAGTCATTGAATGTTTCATCAAGAGGAACCTTGGAAGGTATGATTTTGTCTATTGGCTCAC
CAAATGCTGGACAATTCATCCAACCTGAAGTAACATAGACAAAAGCAAGAATAGTCAAAATCCA
TTTTGCGCATGCTCATAGCTAGAAATTGCCATATAAAGTTGATAACAGTTAGAAACATTTTCCA
ACATTTCATACCATCAGGTGCCTCTTTTATTCGACCTCTACCAGCTCTGTTATAAGGTGCATAA
TCGTTCCTAATCTGCTGAGAATGTAATCTTGAGCCTTCATCTTGTTGCTCTCTCTTTAATTTTT
TGCGTCTCTCTTCACGCTCCTGCAACAATGGCAAGATTAACATAAAAAGGTGGCATGCAAGTTT
GCATGCTTGCCATTAAGAAAAACTGAAACAGACAATCACCACTTTCCAATCCTCAAAATAGATT
ATCTGAAGCATGACCAAAACAAAAGGCAGAAAATTTGGATGCTATGCAAACAAAGGAAGCGACA
TACCAGTAAAACTAGGAAAAGGAACATATGTAAACCAACATTAACAACTTCCAAGTTGTTTCCC
ATCATCTAACGATATTAACTAAGAGAACTTGCTGAAGATAAAATGTACAGTTTGCATTTCAGTA
ATAAATAATCAGCTATCATTAGGAACCTTCTAGATGGAACCAAAAGGTAAATGCAGGATGAGTG
TCATGTAGTACCCTTCGCATTGTAGCAACAGCAGACTCAACATGCTCCTCCTGTGCAAAATCAA
CCTCGACCTGTTGTTCATAAGGCTGTTCATCTTCCTCAGGCAATGGTGAGGCATTTAAATCCAT
TGAGAAGGTCATTCAACATCCACTACTTCATATATCCTCAATAACGTTTTGAGATTTGCAC
Conservation Information
Conserved circRNAs osi_circ_009402
PMCS 0.134317041
Functional Information
Coding potential Y
Potential coding position 6123940-6123966(-)
Potential amino acid sequence MTFSMDLNASPLPEEDEQPYEQQVEVDFAQEEHVESAVATMRREREERRKKLKREQQDEGSRLH
SQQIRNDYAPYNRAGRGRIKEAPDGWMNCPAFGEPIDKIIPSKVPLDETFNDLVPPGKRYSSKQ
VVNKQRKAGREVQISKRY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017