Detail information of Solyc07g066070.2_circ_igg.1


General Information
CircRNA Name Solyc07g066070.2_circ_igg.1
ID in PlantcircBase sly_circ_002439
Alias SL3.0ch07:67728820|67733731
Organism Solanum lycopersicum
Position chr7: 67598147-67603058  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI; find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTG
ATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAGggtcattgccagtccaaaagaagaaaca
gagggactcctttttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgc
cggtgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCATTGCCAGTCCAAAAGAAGAAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAA
TCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACT
CACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCAT
CGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTC
TTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTT
TTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCAT
TTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGT
TAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTA
TGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCA
GAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGT
TGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTC
CTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCT
TTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAA
TACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTT
GCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGA
GAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGA
ATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTC
TTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCA
TTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTT
GGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAA
TGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGT
TCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACC
AAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAG
CACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGT
TTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAA
CAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCT
CATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTG
TGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATG
AGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCAT
TGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAG
TCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTG
TTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTC
CTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACC
GAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGC
TTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATA
GAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCC
ATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCC
CCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTG
ATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTT
TGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAG
CCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAA
CGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAA
TTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAA
GGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAA
TATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCA
ATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATC
TTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTA
ATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACT
GTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGG
TTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACAC
CAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTG
AAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAAT
TGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAA
CCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTT
TAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGT
CCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGA
AATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTA
GATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAG
CTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAAC
CTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGC
TAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAA
GCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGT
TACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTT
TGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACAC
ATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTC
CACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGA
GATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTT
TAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATT
CGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTT
ATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGT
TAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACA
AGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCA
CTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGA
ACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCA
TTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAA
TTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAA
TGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.17098277
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress (acting as miRNA sponges)
Other Information
References Yang et al., 2020