Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G07160_circ_g.1 |
ID in PlantcircBase | ath_circ_020236 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr3: 2266120-2267418 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT3G07160 |
Parent gene annotation |
Glucan synthase-like 10 |
Parent gene strand | - |
Alternative splicing | AT3G07160_circ_g.2 AT3G07160_circ_g.3 |
Support reads | 6 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT3G07160.1:5 AT3G07160.3:5 AT3G07160.2:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.156740415 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2267299-2266122(-) |
Potential amino acid sequence |
MVLGFILEQGFLQAIVSFITMQFQLCTVFFTFSLGTRTHYFGRTILHGGARYQATGRGFVVKHI KFSENYRLYSRSHFVKAMEVILLLVVYLAYGNDEAGAVSYILLTVSSWFLAVSWLFAPYLFNPA GFEWQKVVEDFKEWTNWLFYRGGIGVKGAESWEAWWEEELALSGVGATIRERAILLDDTALSAA LNAQFLFQIGVFTAVPMVLGFILEQGFLQAIVSFITMQFQLCTVFFTFSLGTRTHYFGRTILHG GARYQATGRGFVVKHIKFSENYRLYSRSHFVKAMEVILLLVVYLAYGNDEAGAVSYILLTVSSW FLAVSWLFAPYLFNPAGFEWQKVVEDFKEWTNWLFYRGGIGVKGAESWEAWWEEELALSGVGAT IRERAILLDDTALSAALNAQFLFQIGVFTAVPMVLGFILEQGFLQAIVSFITMQFQLCTVFFTF SLGTRTHYFGRTILHGGARYQATGRGFVVKHIKFSENYRLYSRSHFVKAMEVILLLVVYLAYGN DEAGAVSYILLTVSSWFLAVSWLFAPYLFNPAGFEWQKVVEDFKEWTNWLFYRGGIGVKGAESW EAWWEEELALSGVGATIRERAILLDDTALSAALNAQFLFQIGVFTAVPMVLGFILEQGFLQAIV SFITMQFQLCTVFFTFSLGTRTHYFGRTILHGGARYQATGRGFVVKHIKFSENYRLYSRSHFVK AMEVILLLVVYLAYGNDEAGAVSYILLTVSSWFLAVSWLFAPYLFNPAGFEWQKVVEDFKEWTN WLFYRGGIGVKGAESWEAWWEEEL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |