Detail information of AT3G07160_circ_g.1


General Information
CircRNA Name AT3G07160_circ_g.1
ID in PlantcircBase ath_circ_020236
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2266120-2267418  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT3G07160
Parent gene annotation Glucan synthase-like 10
Parent gene strand -
Alternative splicing AT3G07160_circ_g.2 AT3G07160_circ_g.3
Support reads 6
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07160.1:5
AT3G07160.3:5
AT3G07160.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATCTGAAACAGAAACTGAGCATTCAAGGCGGCGCTAAGTGCAGTATCGTCCAGAAGAATAGC
TCTTTCTCGAATAGTAGCTCCAACTCCAGAAAGTGCcagttcttcttcccaccatgcttcccag
ctttcagctcctttcacaccaattccacctctgtaaaagagccaatttgtccattctttgaagt
cctccacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTTCTTCTTCCCACCATGCTTCCCAGCTTTCAGCTCCTTTCACACCAATTCCACCTCTGTAA
AAGAGCCAATTTGTCCATTCTTTGAAGTCCTCCACGACTCTGAAAGCATAATTTTATTGTTGTT
CAATGAGAAACACGTTACTCAACACTCAACATGATATAAATAAGATAGCACCACTTACTTCTGC
CACTCAAATCCGGCAGGGTTGAATAGGTACGGAGCAAACAGCCAAGAAACAGCCAAAAACCAGC
TGCTAACTGTCAGCAGGATGTAGGAAACCGCACCAGCTTCATCATTGCCATACGCAAGGTACAC
AACCAATAAAAGAATAACTTCCATTCTAGAGAAACGAAAAAGAAGTAGCATATCAATGAATTTT
CAATCCTTTACTATGGCTAAACAGGTATACATCAGAAATGTATATACATAAGAACTAAAGAAGA
GGAGATTACGCTTTGACAAAATGACTTCTGGAATAAAGACGGTAGTTTTCAGAAAATTTGATAT
GCTTCACGACGAAGCCTCTTCCAGTGGCTTGGTACTGTTAACAAACAATGGTTATCACATTCCA
AAAAATTTACAGAGATTTTTTAGAACCGAGAATGAGAATATACCCTTGCACCACCATGGAGAAT
TGTCCGTCCAAAATAATGGGTTCTTGTACCAAGGGAAAATGTGAAGAAGACAGTACATAGCTGA
AATTGCATTGTTATGAAACTGACGATGGCCTACACAATGGAAGATGGAGAAGATTAAGTTCTAT
TAACAAGCAAAACACAAAAAGTAAATTATTCGTTTTGACCAAATGTAAGGATATCCTTCAGATA
ATCGAACAAACAAATATGATCATTCAGATTACAAAAGTTCATCTCCAGAATACAGTGCATAGCT
GTAAGTGACAATGCGCCACGAAAGATGGCCTAAACAGAGACAAATTTCTAACTAACAACAAAAC
ATCAGAAAGAAAACATGTAAATGGGTGACCATAAGTCGACTTATAATCCAATAAAAGTATACTG
TAGATAATCAAGTAAATGAAAGAGCTAACTCAGTATACGTGTCAGTCTCCCTGTCAATCATATC
AGAAAATATGGCATTACAATATGATATGACTAAAATGGTGAGGAACCAGTACCTGGAGAAAACC
CTGTTCCAAAATAAATCCCAAAACCATTGGCACAGCAGTGAAGACACCAATCTGAAACAGAAAC
TGAGCATTCAAGGCGGCGCTAAGTGCAGTATCGTCCAGAAGAATAGCTCTTTCTCGAATAGTAG
CTCCAACTCCAGAAAGTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.156740415
Functional Information
Coding potential Y
Potential coding position 2267299-2266122(-)
Potential amino acid sequence MVLGFILEQGFLQAIVSFITMQFQLCTVFFTFSLGTRTHYFGRTILHGGARYQATGRGFVVKHI
KFSENYRLYSRSHFVKAMEVILLLVVYLAYGNDEAGAVSYILLTVSSWFLAVSWLFAPYLFNPA
GFEWQKVVEDFKEWTNWLFYRGGIGVKGAESWEAWWEEELALSGVGATIRERAILLDDTALSAA
LNAQFLFQIGVFTAVPMVLGFILEQGFLQAIVSFITMQFQLCTVFFTFSLGTRTHYFGRTILHG
GARYQATGRGFVVKHIKFSENYRLYSRSHFVKAMEVILLLVVYLAYGNDEAGAVSYILLTVSSW
FLAVSWLFAPYLFNPAGFEWQKVVEDFKEWTNWLFYRGGIGVKGAESWEAWWEEELALSGVGAT
IRERAILLDDTALSAALNAQFLFQIGVFTAVPMVLGFILEQGFLQAIVSFITMQFQLCTVFFTF
SLGTRTHYFGRTILHGGARYQATGRGFVVKHIKFSENYRLYSRSHFVKAMEVILLLVVYLAYGN
DEAGAVSYILLTVSSWFLAVSWLFAPYLFNPAGFEWQKVVEDFKEWTNWLFYRGGIGVKGAESW
EAWWEEELALSGVGATIRERAILLDDTALSAALNAQFLFQIGVFTAVPMVLGFILEQGFLQAIV
SFITMQFQLCTVFFTFSLGTRTHYFGRTILHGGARYQATGRGFVVKHIKFSENYRLYSRSHFVK
AMEVILLLVVYLAYGNDEAGAVSYILLTVSSWFLAVSWLFAPYLFNPAGFEWQKVVEDFKEWTN
WLFYRGGIGVKGAESWEAWWEEEL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017