Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011691_circ_g.1 |
ID in PlantcircBase | zma_circ_009749 |
Alias | zma_circ_0002867 |
Organism | Zea mays |
Position | chr8: 158901909-158903486 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d011691 |
Parent gene annotation |
Homeodomain-like/winged-helix DNA-binding family protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d011691_T003:1 Zm00001d011691_T006:3 Zm00001d011691_T004:3 Zm00001d011691_T002:3 Zm00001d011691_T009:4 Zm00001d011691_T008:2 Zm00001d011691_T001:3 Zm00001d011691_T007:3 Zm00001d011691_T005:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.098070612 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
158902054-158903483(+) 158903411-158901924(+) 158902675-158902703(-) |
Potential amino acid sequence |
MLPADADKKPRDGKTPPKYGAMIMEALSELNQPNGSDIDAIFDFIKQRHVVQSTFRRFLPSKLR RLADSNKIEKDKWRNLSFSASGLGSSKVRVPKITGSSSSPSSSSQALLLPAANNVTEAMLPADA DKKPRDGKTPPKYGAMIMEALSELNQPNGSDIDAIFDFIKQRHVVQSTFRRFLPSKLRRLADSN KIEKDKWRNLSFSASGLGSSKVRVPKITGSSSSPSSSSQALLLPAANNVTEAMLPADADKKPRD GKTPPKYGAMIMEALSELNQPNGSDIDAIFDFIKQRHVVQSTFRRFLPSKLRRLADSNKIEKDK WRNLSFSASGLGSSKVRVPKITGSSSSPSSSSQALLLPAANNVTEAMLPADADKKPRDGKTPPK YGAMIMEALSELNQPNGSDIDAIFDFIKQRHVVQSTFRRFLPSKLRRLADSNKIEK(+) MWCNRPLEDFYPQSYGDLQTQTKLKRTNGGI*(+) MAPYFGGVFPSRGFLSASAGSIASVTLFAAGRSRACELDDGEDEDPVIFGTRTLLDPSPLALKL KFLHLSFSILFESASRRNFEGRNLLKVDCTTCLCFMKSKIASISEPFG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |