Detail information of BGIOSGA002599_circ_g.1


General Information
CircRNA Name BGIOSGA002599_circ_g.1
ID in PlantcircBase osi_circ_010590
Alias Chr01:285034_286629(MH63RS2), Chr01:316363_317958(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 320498-322093  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA002599
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002599_circ_igg.1 BGIOSGA002599_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA002599-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACACAGCAGGTGGAAAAAGAAATGGAGGAACTCAAGAAGCAACGAGACAATGCACAGTCGAAA
CTTGAATTACAGAAGAAGATGGGTGATAATCAGCCAgtggagtagcttgagctttgcactatgg
gttggcacttgcaggggctgataactggaggtgtgattctgctcgtcagtagcaggaagaattc
acacaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAGTAGCTTGAGCTTTGCACTATGGGTTGGCACTTGCAGGGGCTGATAACTGGAGGTGTGA
TTCTGCTCGTCAGTAGCAGGAAGAATTCACACAATTTTCTGTTCAGCAAGGACCTCTTCTTCGT
GTATTGCTTCCACCAATCATATTTAATGCTGGGTGAGTTTTCTGTGTAGCTATAATTCATGTAA
TTAGCTCCCAACCAAAGTGGAGTTTATTTCTTTTCCTTCCATATGTTATTTTAGTTCGGCTTTG
GCTAAAATCTTGAGAACAAAATTCACTGCAATAGGACTCACTTGAGATATTCATGCATTTCAGC
AGCATAAATTTTGTTCTATCATTTTTTCCATTCTGTATAAAATGTTGTTTTTATATTTATGAAT
TCATCAAAACCATGTTTGTAAGACTTAAACATCTGTGATTTGTCAATGTGAAGGTACACTTACT
GAACTAGATTTATGAAATAGTCAACGGCCCACCTATTCTTATGAAATTATTCTGAAAATTAATT
AAACAATCACAGTTGTAATGATATCAGTATGTTAATAATGTATCTGATCTCCTAATGAATTTCT
AAAAACGCTAATGAGATGCATCAGATCAAAATATTACCACTAGGCCACTTCCTTTAAGTGGGAG
GCACTTGCTCTGTACTCTGTCCTATTGCCACTATATTGTTTAATCATTCTGCATATTTAAAACT
AATGTGAGTTTTGTTAAAAGGTCATAGCCGCAACACAGCTAATTATAAAGAGGGTAAGTTCTTG
AATGTGTGGGCTAAGTGACATTAGTATGGCAGGACTAATAATAAGCAGTGTGTATTTGCAGTGT
CATGAACATGTTAAACTAGACAATTTATTTGCACTGTCATGCAAATACACAGTTTGAGGCCTCT
TTTCTATTTACATAATTTACTGCATATTTGCATTTTTACTGCTCCTTGGTTTGAACAGGAAAGT
ATAATGAAGTCTATCTTTATTGGGAATATTGGCAGACTGACTCTAAATTTCCACTGCAGCTCGG
ATAAAAGAAGTGGACACATACCTTATCGAGACTCAAAGTTGACACGCATTCTCCAGCTTTCTTT
GGGTGGAAATGCAAGAGCAGCCATCATCTGTACCATGAGTCCAGCGCAAACACATGTAGAACAA
TCTAGAAATACGTACTCTATTCTTTGCAACCTGTGCCAAGGAGGTTACAAATAATGCAAAAGTT
AATATGGTAAGATCTGTGACTGTGAGACATCATTTATTCACTTATCAGAATGCAAATCTTCATC
CCTTGGTACATACAGGTGGTATCAGATAAGCAATTGGTGAAGCACCTTCAGATAGAAGTTGCTA
GACTTGAAACTGAACTGAGAATCCCTGATCGTGCCTCCTCTTCTGAGATCATTATAATGGAAAG
GAACAGGAAGATTAGACAGGTAAATGCCTATGCTCAAGGATGAAATTAACTGGAATCATTTCCA
TTTTGTAACTGACCTAATTAATTGAACACAGCAGGTGGAAAAAGAAATGGAGGAACTCAAGAAG
CAACGAGACAATGCACAGTCGAAACTTGAATTACAGAAGAAGATGGGTGATAATCAGCCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021