Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d028162_circ_g.1 |
ID in PlantcircBase | zma_circ_006430 |
Alias | zma_circ_0000467 |
Organism | Zea mays |
Position | chr1: 24775577-24775965 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d028162 |
Parent gene annotation |
sulfate permease1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d028162_T001:1 Zm00001d028162_T009:1 Zm00001d028162_T005:1 Zm00001d028162_T003:1 Zm00001d028162_T006:1 Zm00001d028162_T007:1 Zm00001d028162_T002:1 Zm00001d028162_T004:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.194942909 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
24775647-24775643(+) 24775675-24775602(+) 24775914-24775761(-) |
Potential amino acid sequence |
MPAPVEHREDVLQAEPDLLGPGLVLVLPQRVVGEERLLHRVRDLGEEVLLRWDADFVPMPVLRA AVRRRSASNVGAVVVSPIGHRSRRHRRRCSRWDGRTTAGFRNTWGMQRLAMVSPAMKSPLNLPR E*(+) MCCRPSQIFLDLGWSLYCRSGSSAKNVSFTASEISARRFFSGGTPTLYPCPCSVRRCDDVRLAT SVPLSSPPSDTVRGGIVAGAPGGMDVRRLVSEIPGVCRGWQW*(+) MPPRTVSDGGDDNGTDVASRTSSHRRTEHGHGYKVGVPPEKNLLAEISDAVKETFFADDPLRQY KDQPRSKKIWLGLQHIFPVLDWSRHYSLGKFKGDFIAGLTIASLCIPQVFLKPAVVRPSHREHR RRCRRERCPMGETTTAPTLLAERRRTAARSTGMGTKSASHRRRTSSPRSLTR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |