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circRNA ID
Zm00001d025421_circ_g.1
Alias
zma_circ_006430, Zm10circ00054
Organism
Zea mays
Position
chr10: 118149615-118150877  JBrowse»
Reference genome
AGPv4.38
Type  
ei-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d025421
Parent gene annotation
F-box protein 7
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
CTTAGGGGCACCACAGTTGGTGCAAATAACAGGTTGGATGTACTGAAGATTCTAACCACCGGAG
TGAATGCAACTGAGCTGCAAAACTGGAAAGGAAGCActgtgaacataaatcaaaatctcatata
taagtggatacacagctgtgaatctgtgatttggcacttagttctagtgtgcccaatttagttt
gcatagcg
Support reads
NA
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
TA-GG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTGTGAACATAAATCAAAATCTCATATATAAGTGGATACACAGCTGTGAATCTGTGATTTGGCA
CTTAGTTCTAGTGTGCCCAATTTAGTTTGCATAGCGCGCACACAGATCTGATGCATCATGGATA
TTACATACAAGTATAGAACATAGAGCTATCAGTATGATCTATAGATCTGCAGTAAGCCAGTAGC
CATGCTCCTTGGACTCAATTGTGTGTTAAAATGAAGGCATGCTGGAATTGTTAGTTTGGTTTTA
GGTGCAGAGCTCATCCCATTGCAATTCCTGGAGATAGTCCTCCGGTAAATACTAATTTTCTATT
TGAAAACCGTCTGAAAGCTCTTGACTTAATTCCTAATTTGCTGTTTTGCTATTATTGTATAATT
GATACTATTTGTTAGAGCCTTCAGTATTCTGGCTGTGTTATATTTGCACTGACTTTTTATATTT
GTTGCTTATTCAGGTCTCTATGTGAGCAGGAACACATACATTCATACTGGAGTTACAGAATGGC
AATTCAAGAAAACTGTCAATGTGGTATGGTGGCACTGTTTAGTTTTTTGCAACTCCTCGTGACA
CATTTACAAATCCTGATCATTATGAACATGTTATTATCTGTTATCTTATTGATTTGATGTTCTA
AATTTTACAAAATTGTTGGTATTAATTTATGTTCAGGTTTGCTACTACCGTTACTTAAGATTTT
TCCCGAGCGGGAAGTTTCTCTATAAGGTCCCTATTCACAACTCCCATGTACTCATCTATCACTC
AAGAGCATATTTCTCACTCGCTCCATTTATCCTTTTTTTTTCTTTCATCCCTGTGAATTACCAG
ATCTCTCCAGATAAAGTTAAAGACGCTGTTAAGTGCATGCATTTCCGGGCATCAAAGGCTGATT
GTGTATTTAAAGGTGACTACGTGCTGTCAGAGGATGGCCAGGTGAGAGTCCAGCAGGCTGACTT
ATTCTTTCTTCAGTTGCCTTTCACATTCTTCCTAATATGAGCTACTCTTTGTGGCATGCAGATA
GAAATGGCTCTCCTGTACCCAGGGCATCGGTACACGCTTGTCAGGATGCACCTTAGGTATTTTG
TATGAAATTGTTGCCCGGGTTTTGATGATTTTTGCCGGTACCTAGCCTCTGAAATTTGTGCCAA
CATTCTGCAGGCTTAGGGGCACCACAGTTGGTGCAAATAACAGGTTGGATGTACTGAAGATTCT
AACCACCGGAGTGAATGCAACTGAGCTGCAAAACTGGAAAGGAAGCA
Number of exons covered
Zm00001d025421_T001:5
Zm00001d025421_T002:5
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Han et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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