Detail information of BGIOSGA019233_circ_g.6


General Information
CircRNA Name BGIOSGA019233_circ_g.6
ID in PlantcircBase osi_circ_015939
Alias Chr05:3618226_3618506(MH63RS2), Chr05:3618226_3618506(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 3807263-3807544  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ, CIRI2, find_circ
Parent gene BGIOSGA019233
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019233_circ_igg.1 BGIOSGA019233_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA019233-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTTAGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTT
TCCTACAATGGATTGCACGATTTCACTCTACACAAGgtcgtattgctcatccagtgcttaatat
ggagttaagagcttttgagctaatagaagtttcccatcaagaggagatagaacttgatcacaat
attaatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGTATTGCTCATCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCA
TCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATATCAA
TAAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTACTTTGATGTATTTAGGTT
TATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATG
GATTGCACGATTTCACTCTACACAAG
Conservation Information
Conserved circRNAs osa_circ_026738 osa_circ_026737
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021