Detail information of AT3G09600_circ_g.2


General Information
CircRNA Name AT3G09600_circ_g.2
ID in PlantcircBase ath_circ_020688
Alias 3:2946925-2948296
Organism Arabidpsis thaliana
Position chr3: 2946925-2948296  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G09600
Parent gene annotation Protein REVEILLE 8
Parent gene strand +
Alternative splicing AT3G09600_circ_g.1
Support reads 1/2
Tissues seedling;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G09600.3:7
AT3G09600.2:7
AT3G09600.4:6
AT3G09600.1:7
AT3G09600.9:7
AT3G09600.6:7
AT3G09600.8:7
AT3G09600.7:7
AT3G09600.5:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGACAACGTGACGACCGAGCTCCCAAGCGTTGTTTCCCTTGTCAAGAACTCAACAAGCGACAA
ATCAGCATAACAAAAATATGAGCCATCAGCTAGCAAgtttgatcgtgactggaagaagattgaa
gattttgttggttcaaagactgtgattcaggttttaaaatagcttactctgcatttttggtcgc
agttactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGATCGTGACTGGAAGAAGATTGAAGATTTTGTTGGTTCAAAGACTGTGATTCAGGTTTTA
AAATAGCTTACTCTGCATTTTTGGTCGCAGTTACTTTGTGGCAATGTTTTCAACTTATTTGACT
TTGTACTGCAGATAAGGAGTCATGCTCAAAAATACTTTCTCAAGGTTCAGAAAAACGGGACATT
AGCTCATGTGCCACCTCCTCGACCTAAGCGCAAAGCAGCTCATCCGTATCCTCAAAAGGCATCA
AAGAACGGTTCGAATATTTTATAATACTTCTTAGTTTGGTTATAGAGTTGAGTTTTTAACTCAC
ATTTTCTTGCAGCTCAAATGCCACTTCAAGTTTCCACGTCTTTTACTACTACGCGAAATGGCGA
CATGCCGGGATATGCTTCATGGGATGATGCCTCAATGCTGCTAAACAGAGTTATTTCACCACAA
CATGAACTTGCTACTCTTCGTGGAGCAGAAGGCATGCACATTTGTCTATCCTTTTTGTTTTCTT
CATTTTATTGGTAGTTGTAGTAAGAATAGGTTCCATCAAAGGACGTTTCATGTGCTTATTATGG
CATATAACGCCACTGATTCAGCTGATATTGGATCAAAGGGCTTATTAAATGTTAGTAGCCCTTC
TACATCTGGCATGGGAAGCTCAAGCCGAACAGTATCAGGTTCTGAGATTGTAAGAAAGGCTAAA
CAGCCTCCAGTGCTTCACGGTAACCATCTGTGAACAATTCCATGTTTTTTCACTAACTTTTATG
CATGATGGAGACTGTACTGATACTATCTTTGTAGGTGTTCCTGATTTTGCTGAAGTTTATAATT
TCATTGGGAGTGTCTTTGATCCTGAAACGAGAGGCCATGTGGAAAAGCTCAAGGAAATGGATCC
TATAAATTTCGAAACTGTGAGTCAAGAGTTTACAAGCTTTCAGATTAATTGGTGTTCAAGCTCT
TAGCATTTCTTCACTAATCACATAGTATGGTGTTTACAGGTTCTGTTATTGATGAGAAACCTCA
CAGTTAACTTATCAAACCCTGATTTAGAATCCACTGTAAGTGTTAAATTTGCGATAAAAGATTT
GTGATGACCAACTTTCTCAGAGTCTGAAACTATTTCACTCTCAACCAATGAGTTGGAGGCACTT
CTTTTATGATCTTTGGTTCCTTACATTGAAATGAGTTTTTTTGCGCTTGCGTGATCAAATTTAA
TCTAACCTCAGCTAGTCGGATTGTAATGATGCTGCAGAGGAAAGTCCTCTTATCATATGACAAC
GTGACGACCGAGCTCCCAAGCGTTGTTTCCCTTGTCAAGAACTCAACAAGCGACAAATCAGCAT
AACAAAAATATGAGCCATCAGCTAGCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.181246222
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020