Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G19870_circ_g.2 |
ID in PlantcircBase | ath_circ_003462 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 6897544-6898137 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | AT1G19870 |
Parent gene annotation |
Protein IQ-DOMAIN 32 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 26 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G19870.2:1 AT1G19870.1:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.144332534 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
6897682-6897546(-) |
Potential amino acid sequence |
MASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLNKSSGDKRGWSFRKKSGK QRGLITSVVSETTPASRTRETLESALLKSPSPDNNNVSEKQQQSFSVDEKKSQLPVVTYVAEPV DEKKTQSVIEEKTELLSVEEQIDHRTEVSPVIVESKGTETEEDDLIGTELQGPSAADAAKIEED VTSEVEMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLNKSSGDKRGWSF RKKSGKQRGLITSVVSETTPASRTRETLESALLKSPSPDNNNVSEKQQQSFSVDEKKSQLPVVT YVAEPVDEKKTQSVIEEKTELLSVEEQIDHRTEVSPVIVESKGTETEEDDLIGTELQGPSAADA AKIEEDVTSEVEMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLNKSSGD KRGWSFRKKSGKQRGLITSVVSETTPASRTRETLESALLKSPSPDNNNVSEKQQQSFSVDEKKS QLPVVTYVAEPVDEKKTQSVIEEKTELLSVEEQIDHRTEVSPVIVESKGTETEEDDLIGTELQG PSAADAAKIEEDVTSEVEMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFL (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |