Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G07010_circ_g.3 |
ID in PlantcircBase | ath_circ_001086 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2153750-2153962 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT1G07010 |
Parent gene annotation |
Calcineurin-like metallo-phosphoesterase superfamily protein |
Parent gene strand | + |
Alternative splicing | AT1G07010_circ_g.1 AT1G07010_circ_g.2 AT1G07010_circ_g.4 |
Support reads | 10 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G07010.1:1 AT1G07010.3:1 AT1G07010.2:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.371298457 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
2153771-2153959(+) |
Potential amino acid sequence |
MNVEGDFRYVDARAFDECTDFLDYLEDYAQDWDKAFRNWIFESRQWKEDRRSSQTYWDQWNVVK VNGNHETMNVEGDFRYVDARAFDECTDFLDYLEDYAQDWDKAFRNWIFESRQWKEDRRSSQTYW DQWNVVKVNGNHETMNVEGDFRYVDARAFDECTDFLDYLEDYAQDWDKAFRNWIFESRQWKEDR RSSQTYWDQWNVVKVNGNHETMNVEGDFRYVDARAFDECTDFLDYLEDYAQDWDKAFRNWIFES RQWKEDRRSSQTYWDQWNVVK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |