Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045632_circ_g.1 |
ID in PlantcircBase | zma_circ_009909 |
Alias | zma_circ_0003195 |
Organism | Zea mays |
Position | chr9: 29535855-29536268 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045632 |
Parent gene annotation |
U-box domain-containing protein 14 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045632_T004:1 Zm00001d045632_T002:1 Zm00001d045632_T001:1 Zm00001d045632_T003:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.187072846 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
29536009-29536265(+) 29536205-29536176(+) 29536215-29535946(+) 29535871-29535923(-) |
Potential amino acid sequence |
MADIKKESLALHEMVISSGGEPDACVDEMSSLLKKLKDCVVTEAPTTETPNAQSTSIKHTSPII PDEFRCPISLELMQDPVIVSSGQVDLVHSQFKRAATTAAPPDAQLSKDICFALADKAFDPRVLT RISDKLQLHSMADIKKESLALHEMVISSGGEPDACVDEMSSLLKKLKDCVVTEAPTTETPNAQS TSIKHTSPIIPDEFRCPISLELMQDPVIVSSGQVDLVHSQFKRAATTAAPPDAQLSKDICFALA DKAFDPRVLTRISDKLQLHSMADIKKESLALHEMVISSGGEPDACVDEMSSLLKKLKDCVVTEA PTTETPNAQSTSIKHTSPIIPDEFRCPISLELMQDPVIVSSGQVDLVHSQFKRAATTAAPPDAQ LSKDICFALADKAFDPRVLTRISDKLQLHSMADIKKESLALHEMVISSGGEPDACVDEMSSLLK KLKDCVVTEAPTTETPNAQSTSIKHTSPIIPDEFRCPISLELMQDPVIVSSGQ(+) MNSDARYPSSSCKTLSSFPAGRSILCILSSKGLQPQLLHQMHSCQRTYALLLLTRPLTLGSSRG SLISCNCTAWPISRKNPSPCMRWSSPAAANLMPASTRCPPCSRSLKTASSLKPPPQRRPTPSLP P*(+) MPDIPRAHARPCHRFQRAGRSCAFSVQKGCNHSCSTRCTAVKGHMLCSC*(+) MHKIDLPAGNDDRVLHELEGYRASEFIRDDRRCMLYGGRLGVGRLCGGGFSDDAVFKLLEQGGH LVDAGIRFAAAGDDHLMQGEGFFLDIGHAVQLQLIRDPREDPRVKGLVSKSKAYVL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |