Detail information of Os01g0121100_circ_g.4


General Information
CircRNA Name Os01g0121100_circ_g.4
ID in PlantcircBase osa_circ_000169
Alias NA
Organism Oryza sativa
Position chr1: 1184153-1184565  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0121100
Parent gene annotation Similar to SLL2. (Os01t0121100-01);Similar to SLL2. (Os01t012110
0-02)
Parent gene strand +
Alternative splicing Os01g0121100_circ_g.1 Os01g0121100_circ_g.2 Os01g0121100_circ_g.3
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   AC-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTTTTTTTTTGCAGCAATGTTCCATTTTAAGGGTAAAAAGGCAGAAAATCTTCATTTTCTGC
TTCAATCATTATATCGCTGGTTATGATGAAAGTCTAgtcagattcttctcttcacctgctgtgc
acatatggatagagtgtagatctcctcatcgaatttttgttgtagctttgttcacaacatgatg
ggaataac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAGATTCTTCTCTTCACCTGCTGTGCACATATGGATAGAGTGTAGATCTCCTCATCGAATTT
TTGTTGTAGCTTTGTTCACAACATGATGGGAATAACAAGGAACATAACTAAGTTATTGCCTCAC
TAGGGAATGCAAAACACGTTAGCATTATAGTAATATCTACCAACATGTAGTTTCGATAACAGCC
AATGCCTATCGAGTGTTGTCTTCTAGCTAAGGTTGCCTGGTTCCCACTGCCCATTGGCCAAATT
AAATTCAGAACTTTTAGACTTGTCTTTTCCCTATCTACTAGCTACTATGGATGGACTACTTTTT
TTTTTGCAGCAATGTTCCATTTTAAGGGTAAAAAGGCAGAAAATCTTCATTTTCTGCTTCAATC
ATTATATCGCTGGTTATGATGAAAGTCTA
Conservation Information
Conserved circRNAs NA
PMCS 0.118240517
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017