Plant Circular RNA Database

Detail information of POPTR_0005s27920_circ_g.1

			
						 General Information
					
						CircRNA Name
						POPTR_0005s27920_circ_g.1
					
						ID in PlantcircBase
						pop_circ_001708
					
						Alias
						Chr05:25723407-25727850
					
						Organism
						
							Populus trichocarpa						
					
						Position
						
							chr5: 25365910-25370353  JBrowse»						
					
						Reference genome
						
							Populus trichocarpa genome v3.0 						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							POPTR_0005s27920						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							POPTR_0005s27920_circ_g.2 POPTR_0005s27920_circ_g.3 						
					
						Support reads
						NA
					
						Tissues
						stem xylem
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						POPTR_0005s27920.1:17

General Information
CircRNA Name	POPTR_0005s27920_circ_g.1
ID in PlantcircBase	pop_circ_001708
Alias	Chr05:25723407-25727850
Organism	Populus trichocarpa
Position	chr5: 25365910-25370353 JBrowse»
Reference genome	Populus trichocarpa genome v3.0
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	POPTR_0005s27920
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	POPTR_0005s27920_circ_g.2 POPTR_0005s27920_circ_g.3
Support reads	NA
Tissues	stem xylem
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	POPTR_0005s27920.1:17

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCTGGCCATAAGTGAGGGGAAAGGATCGGCTTATGCTGTGGACATCAGCTGGGTCTGCAGCAGT
GGTTGCATCACCAAGTTCTACCCTCACTGCAGTTCCcttgtcaaggtattcctgcagcttcttg
atcccgcccatataatcctggtcttcaacacagagagttacagccttagaatccgcaccaggac
catcaaat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTGTCAAGGTATTCCTGCAGCTTCTTGATCCCGCCCATATAATCCTGGTCTTCAACACAGAGA
GTTACAGCCTTAGAATCCGCACCAGGACCATCAAATTGAAGGGGACCTGGATTTCTGTACAGGT
CATCCATCCAAAACCTTCCTGCATTTTGTCTCAGCAGCCTGCATTTAAGCCAAACAGTAAAAAT
TATTGCATGCTTCTCTGACTGTCATGGGGAATTTATGTAAAGTTGTGATCACAATATCTATGAA
GTTCCTGATCTTCCCTCTCTCCTAGTATCTGAATAACATAAACATTTGATGAATCATAAAAAAG
AACTTACTCATATGCTTTGCCTTTCAAATCCACAGTAGCAGGATGAATAGCAGGTTTTCCAATT
GAAGATGCACCAGGGCTTTGAGCCCAACGCTTCACTGTCATCATTGCCTATGATTTTACAAAAT
ATAATATAGATAGGCCGTAAAAGAAAGGATTGCAATGCATGTATCATAATTTTTGCTAGGAAAA
ATAACTTTGCAGGTAAAAGAAGAAATCTGCCTTTAAGATCGAAATTAAAACTCAACTGTAATTG
GAGCAGCACCACATCGCCACTTGTTCACAGGATTCTTTAGGTTAGTTACAGTGGCCATGTAACC
ATTCAAACCAGCTGCTAAAATATGGTAGCTGATGTGCCCAAGAACCTATGAAATATACCACTCA
GTATTAATAAAAGATACTTGAATTGGACTTAAAAAGGATGAGAATACATATCAACCCTGGTTGC
TAACATACATAGGCATAGTCGCAATCGAATTTCGATGGTAAAGACCCACGGGCCTGATAACCAA
AAAAGTGGCAGATAGCATTGAACTTTTTCCCCGTGTATGTGCCTTCTTTCTGCTCAAAACACCA
AAGACACCAGTAAAAAGCTAAGTCAATTGCAACAAACATAACAATCATTAGACAGTTAACAGAA
ACCAACAATAGGACCATTTTGCTTGACACGAATTTCAGAAGTATATAGCAAAGCAATTATCGAG
CATGGATCATAACAATGATGGGACTCGTAGAGTCTCATACAATCATTTCACGAGGAAACAAAAT
GTAAAATTATTGCTGCGCCACACAGAAGTTAAAGATATAATAAAATTATCAGGGCTAGGGAAAT
CAACAATGATAAAAAAAGAAAAAAAAGAAACAATGTCATACCAGCCGCTTGTTCATTTCTGTCT
CCACAAGATGAGCTAGAAGTTTCTCTGTTTCAATCTAGGGTAAAAACAAACAAGCAATCAATTT
ATCAACAATGTAATTTTTAATAGTTCCTTTTAATAAGAATTGCATGCTCGTTACCTGGGATAAT
TGTGCCGAGTCATCTGATTCAGGATGAAGCAGCAGCTGTGCCATTAAAAATATTAATATTTTAG
AAGATAAAATACCCATTTGCTTTAAATTGATTGACAAATATCTTGTAATGCAAATCAGTAAGGG
GAAATGTAAACCTGCTTCTTAATATATGGTGGCAAAAATTCAAATAAAGCAGATGTCCATGGTG
AAAGCTGTGATGAAATGTTGTCAGGGGCAACACCATGCCTGAGTAAGCCATGTATTTCCTGAAA
GGTGCATAAAATTTCAGTACTCCCTTTCAGAGGAAAAGAAACGCCATCAAACATCTGTATAGAT
GTATTTTACACACATGCGGACTGTGTTTGTAAGATACTGCAGTCTGAAGGACAACACCCACACA
TTCGCAAATGAGGCCAAGCAGGGAGATACAAAAGCAATTACCTTCAAGAGAGCATAGACCTCGG
GAATGCTTTCTATGAGTCCCTCTGGCAGTAGAATGACTCCATGATTCTTGTCTGGTGCAATTAA
CCATGTCAGATGACCAATATTACAGTTTATCACGAAACACGATATACAATGACTTAGATTGTCT
AAAACCTTGCACTGCTCGGGCTTGGACTGCATCACAAATTTGTGTTGTCAAGTCAAAAAGAGTA
AGCTTTGATGCAGCCACCTCCTCGCCAAGAATAACCTGCAAAAAGCAGCTCAACCATTGTTCAG
GAGAGAGAAAGATAAGCCCATAAAAGTTTCATTTGAAGCTCAAAGGGAGAAAAAAACCAAAAAA
AAGGAACTGCAAAAGTGATGGACTACTAACCATGTTCGGATGAGACTGAAGTGTACATTCCAAA
GCAACATGTGATGCCTTTCGGCCCATGAGCCGGATGAAATAATAATACTGGAAAATGAAATAAG
TTAAAAGTTTTGAAAAGACAAATTTCACAGTGAAGAATGTTGTCTAGTATTCCTTCTCAATCAT
AATTCCATCAACAAATGATACAATGATAGTGAATTCTTCACTGGAGGTCATGAATCAGAAAGTT
GATGAATTTATTACCTTCTCTGCAGAGAGAGCATCCGTGCAGACATTGCTGATGAGCTGGGAAT
TGACCTGCATGAGCGGAAGCATGAAATTTTGTTTTATTAAATTAAATGCTTAATCATGCATATT
CACAACATAAACATTTAGCATTACACCAAGCACCAGAGTTTCCCAAAGGACAGGATCAGACACC
ACTGCCAATTTAAGAAATTAAGAATACCAAAAACCAATTAAGGTTGACGTTTTCCCCCTAGATC
ATGAACCCAAGCACTTTCATTATATTGCACTGCTGCCACTATATGCAACAGAGTTTCATACATT
ATCATATAGGAAAAATTTGAATGCGAGAATGGACAGTAATTCTATGAAGTTCTCCTTGATATGC
TACTTGATTCAACGCAAACGGTCTTATAAATATACAAAATTTTAACATACACAGCAACACCTCC
TACTTTAATTGACTTTGATGCCACCTAAACCATCCATCTTTGTTTCTATAATTCCATTTTACTA
GAAGAAGTAACTTCCTCGACATATTGAGTAACAGAGAGCTGCATGGTGTCATTTGATCCATACC
TTGCATATTGTATCAAAACCAACATTGGTTTCCACAAATTGATTCTTGAGATCTCCATTTAAAG
TAACAGGAACACCAACCACCTGCAAAATTCAAACAGTGTGTGTAGTAAAATTCAGAGGCTGGTA
GCATAAAAGTACACTCAGGAACAGTCGCAAAGGCTGCTAGGAATACAAGCATGAACTATTTGTG
ACTGTTATTAATCCTAGGTGAGAAGACAAGCAGAAATACCTTTGTTGGGCATTTTGCCTCGGCA
AATGTTTCAGCAAGCTGAGCGGCATCTGTATTTGAAGTAACTCCTTCAAAAGAAAAAAGCATCC
GTATTTAGTAATTGTTGCAAAATTGCATCTGTATCTCTTTGTAAATACCAAAGTGTCAAACTTA
CCTCCAATGATAACAAGGCCATCCAATTTCAGATCTTTGCATGCAGTTAGAGCAGCATTAACCT
GTTCAGTTGTTCTTATTTGATCTTTTGTCCGTCCCAACAAATCATAACCACCTTGCCAAGCATA
ACAAAATAAAAAATCAGTCAAGTCTCACAGCCAAGTGACAATCAAAGATCCCGTCATGCAATCA
TATGATAAAAATACATACCTTGATTTTTGTAGGTTGAAAGAATGTCATCTGTAATTTCAAGTGT
TTTCTGAGCGAATAAACCTTCAGAACCTCCTGTTGACAGATAAAAGCATTTTATAATGTAGACG
TCATTTGCTTTTAAATAAAACACAACAGGGTATAATGATGAAACAAACAATCACACAATATGTG
TTCATCAAAAACTTATAAATGCAATGAGATTTGCCATAAATCCAAGACAATCAAATCCAAAGAT
GAAGCACTTGTATGAGATGCCGTTGCTTATGCTCACCTAGAAATCCAAGTAAAGTGCTGTTAGG
GTTATGGATTTTAAGAGCGTTGTGAAGACCCCATATGACATTATGTCCTCCAGGAGATTGTCTC
CCACAAAAAACTATTCCGACCCTGTTGAGAGACACTAAATACATCAGCCAAATATGAGCTTTTT
AAGCAAATACTCATAACAAGCAGATTGCAGAGTCTTAACTTTTCACAGAAACACATGCAGGTGC
GTACCCACACACGCAAACAAAATCAGAAATTGAGAGAGGATTTGACAAGCAACTAGGTTTCCGA
TCATCCTTCCGGATAATAGTGAATTTCAAAAAAGGGCAGCAGCAGGAATAGGAAGAAAGGATCG
ATCCCTTATTCAAAATGTAGACGCGTGGTTTGGATAAAAGTGATACAAAACAGCAGATGATAGT
TGAAAGGAAAAGAAGACACTCGTAAATCACCAGGACCCAAGGCATACCTGAAAGCTGGATGGTC
AGTTATGATTTGAGCATCAGAGACTTTAGCAGATGCCCTGAGGAAGTGAGCTAAAGGCTGGCCA
TAAGTGAGGGGAAAGGATCGGCTTATGCTGTGGACATCAGCTGGGTCTGCAGCAGTGGTTGCAT
CACCAAGTTCTACCCTCACTGCAGTTCC
						
					

			
		

Sequences
Splice junction sequence	GCTGGCCATAAGTGAGGGGAAAGGATCGGCTTATGCTGTGGACATCAGCTGGGTCTGCAGCAGT GGTTGCATCACCAAGTTCTACCCTCACTGCAGTTCCcttgtcaaggtattcctgcagcttcttg atcccgcccatataatcctggtcttcaacacagagagttacagccttagaatccgcaccaggac catcaaat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGTCAAGGTATTCCTGCAGCTTCTTGATCCCGCCCATATAATCCTGGTCTTCAACACAGAGA GTTACAGCCTTAGAATCCGCACCAGGACCATCAAATTGAAGGGGACCTGGATTTCTGTACAGGT CATCCATCCAAAACCTTCCTGCATTTTGTCTCAGCAGCCTGCATTTAAGCCAAACAGTAAAAAT TATTGCATGCTTCTCTGACTGTCATGGGGAATTTATGTAAAGTTGTGATCACAATATCTATGAA GTTCCTGATCTTCCCTCTCTCCTAGTATCTGAATAACATAAACATTTGATGAATCATAAAAAAG AACTTACTCATATGCTTTGCCTTTCAAATCCACAGTAGCAGGATGAATAGCAGGTTTTCCAATT GAAGATGCACCAGGGCTTTGAGCCCAACGCTTCACTGTCATCATTGCCTATGATTTTACAAAAT ATAATATAGATAGGCCGTAAAAGAAAGGATTGCAATGCATGTATCATAATTTTTGCTAGGAAAA ATAACTTTGCAGGTAAAAGAAGAAATCTGCCTTTAAGATCGAAATTAAAACTCAACTGTAATTG GAGCAGCACCACATCGCCACTTGTTCACAGGATTCTTTAGGTTAGTTACAGTGGCCATGTAACC ATTCAAACCAGCTGCTAAAATATGGTAGCTGATGTGCCCAAGAACCTATGAAATATACCACTCA GTATTAATAAAAGATACTTGAATTGGACTTAAAAAGGATGAGAATACATATCAACCCTGGTTGC TAACATACATAGGCATAGTCGCAATCGAATTTCGATGGTAAAGACCCACGGGCCTGATAACCAA AAAAGTGGCAGATAGCATTGAACTTTTTCCCCGTGTATGTGCCTTCTTTCTGCTCAAAACACCA AAGACACCAGTAAAAAGCTAAGTCAATTGCAACAAACATAACAATCATTAGACAGTTAACAGAA ACCAACAATAGGACCATTTTGCTTGACACGAATTTCAGAAGTATATAGCAAAGCAATTATCGAG CATGGATCATAACAATGATGGGACTCGTAGAGTCTCATACAATCATTTCACGAGGAAACAAAAT GTAAAATTATTGCTGCGCCACACAGAAGTTAAAGATATAATAAAATTATCAGGGCTAGGGAAAT CAACAATGATAAAAAAAGAAAAAAAAGAAACAATGTCATACCAGCCGCTTGTTCATTTCTGTCT CCACAAGATGAGCTAGAAGTTTCTCTGTTTCAATCTAGGGTAAAAACAAACAAGCAATCAATTT ATCAACAATGTAATTTTTAATAGTTCCTTTTAATAAGAATTGCATGCTCGTTACCTGGGATAAT TGTGCCGAGTCATCTGATTCAGGATGAAGCAGCAGCTGTGCCATTAAAAATATTAATATTTTAG AAGATAAAATACCCATTTGCTTTAAATTGATTGACAAATATCTTGTAATGCAAATCAGTAAGGG GAAATGTAAACCTGCTTCTTAATATATGGTGGCAAAAATTCAAATAAAGCAGATGTCCATGGTG AAAGCTGTGATGAAATGTTGTCAGGGGCAACACCATGCCTGAGTAAGCCATGTATTTCCTGAAA GGTGCATAAAATTTCAGTACTCCCTTTCAGAGGAAAAGAAACGCCATCAAACATCTGTATAGAT GTATTTTACACACATGCGGACTGTGTTTGTAAGATACTGCAGTCTGAAGGACAACACCCACACA TTCGCAAATGAGGCCAAGCAGGGAGATACAAAAGCAATTACCTTCAAGAGAGCATAGACCTCGG GAATGCTTTCTATGAGTCCCTCTGGCAGTAGAATGACTCCATGATTCTTGTCTGGTGCAATTAA CCATGTCAGATGACCAATATTACAGTTTATCACGAAACACGATATACAATGACTTAGATTGTCT AAAACCTTGCACTGCTCGGGCTTGGACTGCATCACAAATTTGTGTTGTCAAGTCAAAAAGAGTA AGCTTTGATGCAGCCACCTCCTCGCCAAGAATAACCTGCAAAAAGCAGCTCAACCATTGTTCAG GAGAGAGAAAGATAAGCCCATAAAAGTTTCATTTGAAGCTCAAAGGGAGAAAAAAACCAAAAAA AAGGAACTGCAAAAGTGATGGACTACTAACCATGTTCGGATGAGACTGAAGTGTACATTCCAAA GCAACATGTGATGCCTTTCGGCCCATGAGCCGGATGAAATAATAATACTGGAAAATGAAATAAG TTAAAAGTTTTGAAAAGACAAATTTCACAGTGAAGAATGTTGTCTAGTATTCCTTCTCAATCAT AATTCCATCAACAAATGATACAATGATAGTGAATTCTTCACTGGAGGTCATGAATCAGAAAGTT GATGAATTTATTACCTTCTCTGCAGAGAGAGCATCCGTGCAGACATTGCTGATGAGCTGGGAAT TGACCTGCATGAGCGGAAGCATGAAATTTTGTTTTATTAAATTAAATGCTTAATCATGCATATT CACAACATAAACATTTAGCATTACACCAAGCACCAGAGTTTCCCAAAGGACAGGATCAGACACC ACTGCCAATTTAAGAAATTAAGAATACCAAAAACCAATTAAGGTTGACGTTTTCCCCCTAGATC ATGAACCCAAGCACTTTCATTATATTGCACTGCTGCCACTATATGCAACAGAGTTTCATACATT ATCATATAGGAAAAATTTGAATGCGAGAATGGACAGTAATTCTATGAAGTTCTCCTTGATATGC TACTTGATTCAACGCAAACGGTCTTATAAATATACAAAATTTTAACATACACAGCAACACCTCC TACTTTAATTGACTTTGATGCCACCTAAACCATCCATCTTTGTTTCTATAATTCCATTTTACTA GAAGAAGTAACTTCCTCGACATATTGAGTAACAGAGAGCTGCATGGTGTCATTTGATCCATACC TTGCATATTGTATCAAAACCAACATTGGTTTCCACAAATTGATTCTTGAGATCTCCATTTAAAG TAACAGGAACACCAACCACCTGCAAAATTCAAACAGTGTGTGTAGTAAAATTCAGAGGCTGGTA GCATAAAAGTACACTCAGGAACAGTCGCAAAGGCTGCTAGGAATACAAGCATGAACTATTTGTG ACTGTTATTAATCCTAGGTGAGAAGACAAGCAGAAATACCTTTGTTGGGCATTTTGCCTCGGCA AATGTTTCAGCAAGCTGAGCGGCATCTGTATTTGAAGTAACTCCTTCAAAAGAAAAAAGCATCC GTATTTAGTAATTGTTGCAAAATTGCATCTGTATCTCTTTGTAAATACCAAAGTGTCAAACTTA CCTCCAATGATAACAAGGCCATCCAATTTCAGATCTTTGCATGCAGTTAGAGCAGCATTAACCT GTTCAGTTGTTCTTATTTGATCTTTTGTCCGTCCCAACAAATCATAACCACCTTGCCAAGCATA ACAAAATAAAAAATCAGTCAAGTCTCACAGCCAAGTGACAATCAAAGATCCCGTCATGCAATCA TATGATAAAAATACATACCTTGATTTTTGTAGGTTGAAAGAATGTCATCTGTAATTTCAAGTGT TTTCTGAGCGAATAAACCTTCAGAACCTCCTGTTGACAGATAAAAGCATTTTATAATGTAGACG TCATTTGCTTTTAAATAAAACACAACAGGGTATAATGATGAAACAAACAATCACACAATATGTG TTCATCAAAAACTTATAAATGCAATGAGATTTGCCATAAATCCAAGACAATCAAATCCAAAGAT GAAGCACTTGTATGAGATGCCGTTGCTTATGCTCACCTAGAAATCCAAGTAAAGTGCTGTTAGG GTTATGGATTTTAAGAGCGTTGTGAAGACCCCATATGACATTATGTCCTCCAGGAGATTGTCTC CCACAAAAAACTATTCCGACCCTGTTGAGAGACACTAAATACATCAGCCAAATATGAGCTTTTT AAGCAAATACTCATAACAAGCAGATTGCAGAGTCTTAACTTTTCACAGAAACACATGCAGGTGC GTACCCACACACGCAAACAAAATCAGAAATTGAGAGAGGATTTGACAAGCAACTAGGTTTCCGA TCATCCTTCCGGATAATAGTGAATTTCAAAAAAGGGCAGCAGCAGGAATAGGAAGAAAGGATCG ATCCCTTATTCAAAATGTAGACGCGTGGTTTGGATAAAAGTGATACAAAACAGCAGATGATAGT TGAAAGGAAAAGAAGACACTCGTAAATCACCAGGACCCAAGGCATACCTGAAAGCTGGATGGTC AGTTATGATTTGAGCATCAGAGACTTTAGCAGATGCCCTGAGGAAGTGAGCTAAAGGCTGGCCA TAAGTGAGGGGAAAGGATCGGCTTATGCTGTGGACATCAGCTGGGTCTGCAGCAGTGGTTGCAT CACCAAGTTCTACCCTCACTGCAGTTCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.105504859

Conservation Information
Conserved circRNAs	NA
PMCS	0.105504859

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							25370287-25365949(+)
25368113-25365912(-)
						
					

						Potential amino acid sequence
						
							MLWTSAGSAAVVASPSSTLTAVPLSRYSCSFLIPPI*(+)
MGRKASHVALECTLQSHPNMVILGEEVAASKLTLFDLTTQICDAVQARAVQDKNHGVILLPEGL
IESIPEVYALLKEIHGLLRHGVAPDNISSQLSPWTSALFEFLPPYIKKQLLLHPESDDSAQLSQ
IETEKLLAHLVETEMNKRLKEGTYTGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHISYHIL
AAGLNGYMATVTNLKNPVNKWRCGAAPITAMMTVKRWAQSPGASSIGKPAIHPATVDLKGKAYE
LLRQNAGRFWMDDLYRNPGPLQFDGPGADSKAVTLCVEDQDYMGGIKKLQEYLDKGTAVRVELG
DATTAADPADVHSISRSFPLTYGQPLAHFLRASAKVSDAQIITDHPAFRVGIVFCGRQSPGGHN
VIWGLHNALKIHNPNSTLLGFLGGSEGLFAQKTLEITDDILSTYKNQGGYDLLGRTKDQIRTTE
QVNAALTACKDLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETN
VGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASK
LTLFDLTTQICDAVQARAVQDKNHGVILLPEGLIESIPEVYALLKEIHGLLRHGVAPDNISSQL
SPWTSALFEFLPPYIKKQLLLHPESDDSAQLSQIETEKLLAHLVETEMNKRLKEGTYTGKKFNA
ICHFFGYQARGSLPSKFDCDYAYVLGHISYHILAAGLNGYMATVTNLKNPVNKWRCGAAPITAM
MTVKRWAQSPGASSIGKPAIHPATVDLKGKAYELLRQNAGRFWMDDLYRNPGPLQFDGPGADSK
AVTLCVEDQDYMGGIKKLQEYLDKGTAVRVELGDATTAADPADVHSISRSFPLTYGQPLAHFLR
ASAKVSDAQIITDHPAFRVGIVFCGRQSPGGHNVIWGLHNALKIHNPNSTLLGFLGGSEGLFAQ
KTLEITDDILSTYKNQGGYDLLGRTKDQIRTTEQVNAALTACKDLKLDGLVIIGGVTSNTDAAQ
LAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFI
RLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFDLTTQICDAVQARAVQDKNHGVILLPE
GLIESIPEVYALLKEIHGLLRHGVAPDNISSQLSPWTSALFEFLPPYIKKQLLLHPESDDSAQL
SQIETEKLLAHLVETEMNKRLKEGTYTGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHISYH
ILAAGLNGYMATVTNLKNPVNKWRCGAAPITAMMTVKRWAQSPGASSIGKPAIHPATVDLKGKA
YELLRQNAGRFWMDDLYRNPGPLQFDGPGADSKAVTLCVEDQDYMGGIKKLQEYLDKGTAVRVE
LGDATTAADPADVHSISRSFPLTYGQPLAHFLRASAKVSDAQIITDHPAFRVGIVFCGRQSPGG
HNVIWGLHNALKIHNPNSTLLGFLGGSEGLFAQKTLEITDDILSTYKNQGGYDLLGRTKDQIRT
TEQVNAALTACKDLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVE
TNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAA
SKLTLFDLTTQICDAVQARAVQDKNHGVILLPEGLIESIPEVYALLKEIHGLLRHGVAPDNISS
QLSPWTSALFEFLPPYIKKQLLLHPESDDSAQLSQIETEKLLAHLVETEMNKRLKEGTYTGKKF
NAICHFFGYQARGSLPSKFDCDYAYVLGHISYHILAAGLNGYMATVTNLKNPVNKWRCGAAPIT
AMMTVKRWAQSPGASSIGKPAIHPATVDLKGKAYELLRQNAGRFWMDDLYRNPGPLQFDGPGAD
SKAVTLCVEDQDYMGGIKKLQEYLDK(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	25370287-25365949(+) 25368113-25365912(-)
Potential amino acid sequence	MLWTSAGSAAVVASPSSTLTAVPLSRYSCSFLIPPI*(+) MGRKASHVALECTLQSHPNMVILGEEVAASKLTLFDLTTQICDAVQARAVQDKNHGVILLPEGL IESIPEVYALLKEIHGLLRHGVAPDNISSQLSPWTSALFEFLPPYIKKQLLLHPESDDSAQLSQ IETEKLLAHLVETEMNKRLKEGTYTGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHISYHIL AAGLNGYMATVTNLKNPVNKWRCGAAPITAMMTVKRWAQSPGASSIGKPAIHPATVDLKGKAYE LLRQNAGRFWMDDLYRNPGPLQFDGPGADSKAVTLCVEDQDYMGGIKKLQEYLDKGTAVRVELG DATTAADPADVHSISRSFPLTYGQPLAHFLRASAKVSDAQIITDHPAFRVGIVFCGRQSPGGHN VIWGLHNALKIHNPNSTLLGFLGGSEGLFAQKTLEITDDILSTYKNQGGYDLLGRTKDQIRTTE QVNAALTACKDLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETN VGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASK LTLFDLTTQICDAVQARAVQDKNHGVILLPEGLIESIPEVYALLKEIHGLLRHGVAPDNISSQL SPWTSALFEFLPPYIKKQLLLHPESDDSAQLSQIETEKLLAHLVETEMNKRLKEGTYTGKKFNA ICHFFGYQARGSLPSKFDCDYAYVLGHISYHILAAGLNGYMATVTNLKNPVNKWRCGAAPITAM MTVKRWAQSPGASSIGKPAIHPATVDLKGKAYELLRQNAGRFWMDDLYRNPGPLQFDGPGADSK AVTLCVEDQDYMGGIKKLQEYLDKGTAVRVELGDATTAADPADVHSISRSFPLTYGQPLAHFLR ASAKVSDAQIITDHPAFRVGIVFCGRQSPGGHNVIWGLHNALKIHNPNSTLLGFLGGSEGLFAQ KTLEITDDILSTYKNQGGYDLLGRTKDQIRTTEQVNAALTACKDLKLDGLVIIGGVTSNTDAAQ LAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFI RLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFDLTTQICDAVQARAVQDKNHGVILLPE GLIESIPEVYALLKEIHGLLRHGVAPDNISSQLSPWTSALFEFLPPYIKKQLLLHPESDDSAQL SQIETEKLLAHLVETEMNKRLKEGTYTGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHISYH ILAAGLNGYMATVTNLKNPVNKWRCGAAPITAMMTVKRWAQSPGASSIGKPAIHPATVDLKGKA YELLRQNAGRFWMDDLYRNPGPLQFDGPGADSKAVTLCVEDQDYMGGIKKLQEYLDKGTAVRVE LGDATTAADPADVHSISRSFPLTYGQPLAHFLRASAKVSDAQIITDHPAFRVGIVFCGRQSPGG HNVIWGLHNALKIHNPNSTLLGFLGGSEGLFAQKTLEITDDILSTYKNQGGYDLLGRTKDQIRT TEQVNAALTACKDLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVE TNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAA SKLTLFDLTTQICDAVQARAVQDKNHGVILLPEGLIESIPEVYALLKEIHGLLRHGVAPDNISS QLSPWTSALFEFLPPYIKKQLLLHPESDDSAQLSQIETEKLLAHLVETEMNKRLKEGTYTGKKF NAICHFFGYQARGSLPSKFDCDYAYVLGHISYHILAAGLNGYMATVTNLKNPVNKWRCGAAPIT AMMTVKRWAQSPGASSIGKPAIHPATVDLKGKAYELLRQNAGRFWMDDLYRNPGPLQFDGPGAD SKAVTLCVEDQDYMGGIKKLQEYLDK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Liu et al., 2021

circRNA

Detail information of POPTR_0005s27920_circ_g.1

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