Plant Circular RNA Database

Detail information of Csa2G084270_circ_g.1

			
						 General Information
					
						CircRNA Name
						Csa2G084270_circ_g.1
					
						ID in PlantcircBase
						csa_circ_000921
					
						Alias
						Chr2:6844259_6853385
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr2: 6844259-6853385  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa2G084270						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa2G084270.1:2

General Information
CircRNA Name	Csa2G084270_circ_g.1
ID in PlantcircBase	csa_circ_000921
Alias	Chr2:6844259_6853385
Organism	Cucumis sativus
Position	chrChr2: 6844259-6853385 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa2G084270
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa2G084270.1:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTGAAAAGCAGTGGAAGGTTTAGTTTTTGGTTTAGATGGAGGTGGATACGGAAAGTTCTTCTG
ATCATTTGTGCACTCGTATGTTGGAAGCATTTTTTGatggcaaaagtaaggacttgttaacaat
gatacaaattgaggaggaatggattgaatatcaaaatgtaatggaagaagttataacaagaagt
ggactaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1817
Transcript exons: 6844259-6844500,6851811-6853385
ATGGCAAAAGTAAGGACTTGTTAACAATGATACAAATTGAGGAGGAATGGATTGAATATCAAAA
TGTAATGGAAGAAGTTATAACAAGAAGTGGACTAGATAAAAGCATCTTCTTTGACCTCAGAGGA
AATCATGATAAATTTGGTGTTCCAACTGTTGGTGGTTCGTTTGATTACTTTTCAAACTATAGCA
TCAGTGGGCAGCTGGGAAGAAATGCAAATGTGTATAGTGTCACTCTTCAGGATGGTCAAGAGAA
GTACCTCTTTGTTGGATTTGACAGCACCATGTCTGTTGGTTTGAGAGGGCCATCAAATGTCTTT
GGGCATCCAACTGATGAGCTATTAACTGACTTAGATTTGGAACTCTCTCAATGGGATTCATCGG
CAACTGATCGAGTAACTAAGATTTCCTTTGGTCATTTTCCTCTCTCATTCTCAGCTTCCTCCCT
CTCAGGAAAGAGTCTGAGAGATGTATTTTTGAAACATTCTTTATCAGCTTACTTATGCGGACAT
CTCCATACAAGGTTTGGCAAAAACTTGAAGAGGCATCATCATTCAAGTTCTAATTTTTTGTTGC
AGAAGTTTTTCCAGTTTAATGTGCACCAAATATCTTCTGGAAGTATCACCAACTGTTCACTTGA
AGCTCCACCAGTTCAAGAATTCTGGGAGTGGGAGATGGGTGACTGGAGAAAGAGTAGGGCCATG
CGAATTTTGGCCATTGATGGTGGTCATGTGTCATATGTTGACATTGACTTTAAGACAGAAATTA
AGAAAACTATTTTGTTACCAACATTTCCATTAGATTCACGCTTCATGTCAAGATCTTCATCACC
TAATGAATATAAATGCCATTTTGTGGCTTCTTCAGCTTATGAAAATATAAGATCACTTGTTTTT
TCTGTTTCTCCTATTGTATCTATGGTGGCTAGAATATATGACTCTAATCCTGGAATTCTCAGTT
TGATTCTAGAAGCACCTATGAGTAGAATTCACGTAGATAATATCTCAAGAGGAGATCTTTACAC
TGCTCCATGGAATTACAAAGCCTTTGAAGATCCATCTCCTGATAGATATTATTTGCAAATAGAA
GCAATCGATATTGCAGGAAGGTCAACTTTATCTGACTTGAGGCCATTTTCTATCAATGGTCTCA
CTGCAAAGGTGTCCTGGACATGGAATGAGTTCAGGGTGATGGGAGTTCAATGGGCTGCCTTATA
TTACCCTGTTCTCTGGTCGACTCTCTTTATAATGCTTGCAATGCTAATTCTGCCAAAAGCGATT
CTTATTTTTTCGAAGAAGCAATACACTTTCAACAATTTCAAGCTCAATAAAAGCTTCCTGAATG
GCATGGCATGGGTTATACAGGAGCTTAGCAAGATTCCCATGGTATGGTTCTGCATTGTAGGTTA
CCTAATCTACCTTATATCATTTCCATGGTTCATTGGGAAAGTCTTCACAGATGGAAAAGACTGG
GGATACATGACCTATATGGGATGGGTGGTCAAAACTTCGAATGAAACAGAGAAACATAGATATA
TTGGTTCTCCAGATATACTGGTGGTGGTTCTTTCCCATCTTCTTTTTGTGGTTTACCCTGCTAT
TTTCATCATGATTGTTTTTGCTGTTGAAAGAGGAGTCTATGCGGACCATTTCCTCTCTCTTTTG
GCAAAGAAAGAAGATGATTATGACTACAATAATAAGAGGTCTGAATCATTTGACTTGAAAAGCA
GTGGAAGGTTTAGTTTTTGGTTTAGATGGAGGTGGATACGGAAAGTTCTTCTGATCATTTGTGC
ACTCGTATGTTGGAAGCATTTTTTG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CTTGAAAAGCAGTGGAAGGTTTAGTTTTTGGTTTAGATGGAGGTGGATACGGAAAGTTCTTCTG ATCATTTGTGCACTCGTATGTTGGAAGCATTTTTTGatggcaaaagtaaggacttgttaacaat gatacaaattgaggaggaatggattgaatatcaaaatgtaatggaagaagttataacaagaagt ggactaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1817 Transcript exons: 6844259-6844500,6851811-6853385 ATGGCAAAAGTAAGGACTTGTTAACAATGATACAAATTGAGGAGGAATGGATTGAATATCAAAA TGTAATGGAAGAAGTTATAACAAGAAGTGGACTAGATAAAAGCATCTTCTTTGACCTCAGAGGA AATCATGATAAATTTGGTGTTCCAACTGTTGGTGGTTCGTTTGATTACTTTTCAAACTATAGCA TCAGTGGGCAGCTGGGAAGAAATGCAAATGTGTATAGTGTCACTCTTCAGGATGGTCAAGAGAA GTACCTCTTTGTTGGATTTGACAGCACCATGTCTGTTGGTTTGAGAGGGCCATCAAATGTCTTT GGGCATCCAACTGATGAGCTATTAACTGACTTAGATTTGGAACTCTCTCAATGGGATTCATCGG CAACTGATCGAGTAACTAAGATTTCCTTTGGTCATTTTCCTCTCTCATTCTCAGCTTCCTCCCT CTCAGGAAAGAGTCTGAGAGATGTATTTTTGAAACATTCTTTATCAGCTTACTTATGCGGACAT CTCCATACAAGGTTTGGCAAAAACTTGAAGAGGCATCATCATTCAAGTTCTAATTTTTTGTTGC AGAAGTTTTTCCAGTTTAATGTGCACCAAATATCTTCTGGAAGTATCACCAACTGTTCACTTGA AGCTCCACCAGTTCAAGAATTCTGGGAGTGGGAGATGGGTGACTGGAGAAAGAGTAGGGCCATG CGAATTTTGGCCATTGATGGTGGTCATGTGTCATATGTTGACATTGACTTTAAGACAGAAATTA AGAAAACTATTTTGTTACCAACATTTCCATTAGATTCACGCTTCATGTCAAGATCTTCATCACC TAATGAATATAAATGCCATTTTGTGGCTTCTTCAGCTTATGAAAATATAAGATCACTTGTTTTT TCTGTTTCTCCTATTGTATCTATGGTGGCTAGAATATATGACTCTAATCCTGGAATTCTCAGTT TGATTCTAGAAGCACCTATGAGTAGAATTCACGTAGATAATATCTCAAGAGGAGATCTTTACAC TGCTCCATGGAATTACAAAGCCTTTGAAGATCCATCTCCTGATAGATATTATTTGCAAATAGAA GCAATCGATATTGCAGGAAGGTCAACTTTATCTGACTTGAGGCCATTTTCTATCAATGGTCTCA CTGCAAAGGTGTCCTGGACATGGAATGAGTTCAGGGTGATGGGAGTTCAATGGGCTGCCTTATA TTACCCTGTTCTCTGGTCGACTCTCTTTATAATGCTTGCAATGCTAATTCTGCCAAAAGCGATT CTTATTTTTTCGAAGAAGCAATACACTTTCAACAATTTCAAGCTCAATAAAAGCTTCCTGAATG GCATGGCATGGGTTATACAGGAGCTTAGCAAGATTCCCATGGTATGGTTCTGCATTGTAGGTTA CCTAATCTACCTTATATCATTTCCATGGTTCATTGGGAAAGTCTTCACAGATGGAAAAGACTGG GGATACATGACCTATATGGGATGGGTGGTCAAAACTTCGAATGAAACAGAGAAACATAGATATA TTGGTTCTCCAGATATACTGGTGGTGGTTCTTTCCCATCTTCTTTTTGTGGTTTACCCTGCTAT TTTCATCATGATTGTTTTTGCTGTTGAAAGAGGAGTCTATGCGGACCATTTCCTCTCTCTTTTG GCAAAGAAAGAAGATGATTATGACTACAATAATAAGAGGTCTGAATCATTTGACTTGAAAAGCA GTGGAAGGTTTAGTTTTTGGTTTAGATGGAGGTGGATACGGAAAGTTCTTCTGATCATTTGTGC ACTCGTATGTTGGAAGCATTTTTTG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.472045002

Conservation Information
Conserved circRNAs	NA
PMCS	0.472045002

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6853323-6844279(+)
6844286-6844279(+)
						
						Potential amino acid sequence
						
							MEVDTESSSDHLCTRMLEAFFDGKSKDLLTMIQIEEEWIEYQNVMEEVITRSGLDKSIFFDLRG
NHDKFGVPTVGGSFDYFSNYSISGQLGRNANVYSVTLQDGQEKYLFVGFDSTMSVGLRGPSNVF
GHPTDELLTDLDLELSQWDSSATDRVTKISFGHFPLSFSASSLSGKSLRDVFLKHSLSAYLCGH
LHTRFGKNLKRHHHSSSNFLLQKFFQFNVHQISSGSITNCSLEAPPVQEFWEWEMGDWRKSRAM
RILAIDGGHVSYVDIDFKTEIKKTILLPTFPLDSRFMSRSSSPNEYKCHFVASSAYENIRSLVF
SVSPIVSMVARIYDSNPGILSLILEAPMSRIHVDNISRGDLYTAPWNYKAFEDPSPDRYYLQIE
AIDIAGRSTLSDLRPFSINGLTAKVSWTWNEFRVMGVQWAALYYPVLWSTLFIMLAMLILPKAI
LIFSKKQYTFNNFKLNKSFLNGMAWVIQELSKIPMVWFCIVGYLIYLISFPWFIGKVFTDGKDW
GYMTYMGWVVKTSNETEKHRYIGSPDILVVVLSHLLFVVYPAIFIMIVFAVERGVYADHFLSLL
AKKEDDYDYNNKRSESFDLKSSGRFSFWFRWRWIRKVLLIICALVCWKHFLMAKVRTC*
MIQIEEEWIEYQNVMEEVITRSGLDKSIFFDLRGNHDKFGVPTVGGSFDYFSNYSISGQLGRNA
NVYSVTLQDGQEKYLFVGFDSTMSVGLRGPSNVFGHPTDELLTDLDLELSQWDSSATDRVTKIS
FGHFPLSFSASSLSGKSLRDVFLKHSLSAYLCGHLHTRFGKNLKRHHHSSSNFLLQKFFQFNVH
QISSGSITNCSLEAPPVQEFWEWEMGDWRKSRAMRILAIDGGHVSYVDIDFKTEIKKTILLPTF
PLDSRFMSRSSSPNEYKCHFVASSAYENIRSLVFSVSPIVSMVARIYDSNPGILSLILEAPMSR
IHVDNISRGDLYTAPWNYKAFEDPSPDRYYLQIEAIDIAGRSTLSDLRPFSINGLTAKVSWTWN
EFRVMGVQWAALYYPVLWSTLFIMLAMLILPKAILIFSKKQYTFNNFKLNKSFLNGMAWVIQEL
SKIPMVWFCIVGYLIYLISFPWFIGKVFTDGKDWGYMTYMGWVVKTSNETEKHRYIGSPDILVV
VLSHLLFVVYPAIFIMIVFAVERGVYADHFLSLLAKKEDDYDYNNKRSESFDLKSSGRFSFWFR
WRWIRKVLLIICALVCWKHFLMAKVRTC*
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to salt stress in root

Functional Information
Coding potential	Y
Potential coding position	6853323-6844279(+) 6844286-6844279(+)
Potential amino acid sequence	MEVDTESSSDHLCTRMLEAFFDGKSKDLLTMIQIEEEWIEYQNVMEEVITRSGLDKSIFFDLRG NHDKFGVPTVGGSFDYFSNYSISGQLGRNANVYSVTLQDGQEKYLFVGFDSTMSVGLRGPSNVF GHPTDELLTDLDLELSQWDSSATDRVTKISFGHFPLSFSASSLSGKSLRDVFLKHSLSAYLCGH LHTRFGKNLKRHHHSSSNFLLQKFFQFNVHQISSGSITNCSLEAPPVQEFWEWEMGDWRKSRAM RILAIDGGHVSYVDIDFKTEIKKTILLPTFPLDSRFMSRSSSPNEYKCHFVASSAYENIRSLVF SVSPIVSMVARIYDSNPGILSLILEAPMSRIHVDNISRGDLYTAPWNYKAFEDPSPDRYYLQIE AIDIAGRSTLSDLRPFSINGLTAKVSWTWNEFRVMGVQWAALYYPVLWSTLFIMLAMLILPKAI LIFSKKQYTFNNFKLNKSFLNGMAWVIQELSKIPMVWFCIVGYLIYLISFPWFIGKVFTDGKDW GYMTYMGWVVKTSNETEKHRYIGSPDILVVVLSHLLFVVYPAIFIMIVFAVERGVYADHFLSLL AKKEDDYDYNNKRSESFDLKSSGRFSFWFRWRWIRKVLLIICALVCWKHFLMAKVRTC* MIQIEEEWIEYQNVMEEVITRSGLDKSIFFDLRGNHDKFGVPTVGGSFDYFSNYSISGQLGRNA NVYSVTLQDGQEKYLFVGFDSTMSVGLRGPSNVFGHPTDELLTDLDLELSQWDSSATDRVTKIS FGHFPLSFSASSLSGKSLRDVFLKHSLSAYLCGHLHTRFGKNLKRHHHSSSNFLLQKFFQFNVH QISSGSITNCSLEAPPVQEFWEWEMGDWRKSRAMRILAIDGGHVSYVDIDFKTEIKKTILLPTF PLDSRFMSRSSSPNEYKCHFVASSAYENIRSLVFSVSPIVSMVARIYDSNPGILSLILEAPMSR IHVDNISRGDLYTAPWNYKAFEDPSPDRYYLQIEAIDIAGRSTLSDLRPFSINGLTAKVSWTWN EFRVMGVQWAALYYPVLWSTLFIMLAMLILPKAILIFSKKQYTFNNFKLNKSFLNGMAWVIQEL SKIPMVWFCIVGYLIYLISFPWFIGKVFTDGKDWGYMTYMGWVVKTSNETEKHRYIGSPDILVV VLSHLLFVVYPAIFIMIVFAVERGVYADHFLSLLAKKEDDYDYNNKRSESFDLKSSGRFSFWFR WRWIRKVLLIICALVCWKHFLMAKVRTC*
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa2G084270_circ_g.1

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