Detail information of AT4G14930_circ_g.9


General Information
CircRNA Name AT4G14930_circ_g.9
ID in PlantcircBase ath_circ_030989
Alias NA
Organism Arabidpsis thaliana
Position chr4: 8539810-8540120  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT4G14930
Parent gene annotation At4g14930
Parent gene strand +
Alternative splicing AT4G14930_circ_g.2 AT4G14930_circ_g.3 AT4G14930_circ_g.4 AT4G14930_circ_g.5 AT4G14930_circ_g.6 AT4G14930_circ_g.7 AT4G14930_circ_g.8 AT4G14930_circ_g.10 AT4G14930_circ_g.11
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AC-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTTCACTGGAAACCAGATTTCTTCTATGGCCAATTCAAATTGTTATAGACCATGTTATGCTT
CTATGGTTCCTGCCTGAGTTTATCAAACTAGCACTTgtcggtgaacatttcctcctctgtttct
ctttgttttggtttcctatttccttactatgttatgtttttgtacagattattagggtgcaact
gttatttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 311
Transcript exons: 8539810-8540120
GTCGGTGAACATTTCCTCCTCTGTTTCTCTTTGTTTTGGTTTCCTATTTCCTTACTATGTTATG
TTTTTGTACAGATTATTAGGGTGCAACTGTTATTTGTCCGTTTTAAAAATTGCATTTTAAACTT
TATAAAACTACCAAAATTGCTGAAACTTTGTTTAGGATTAGAACAAGATTTTGAGAGTATAGTA
AGAGAAACTCTAGTTAGATTGTTTCACTGGAAACCAGATTTCTTCTATGGCCAATTCAAATTGT
TATAGACCATGTTATGCTTCTATGGTTCCTGCCTGAGTTTATCAAACTAGCACTT

Genomic sequence GTCGGTGAACATTTCCTCCTCTGTTTCTCTTTGTTTTGGTTTCCTATTTCCTTACTATGTTATG
TTTTTGTACAGATTATTAGGGTGCAACTGTTATTTGTCCGTTTTAAAAATTGCATTTTAAACTT
TATAAAACTACCAAAATTGCTGAAACTTTGTTTAGGATTAGAACAAGATTTTGAGAGTATAGTA
AGAGAAACTCTAGTTAGATTGTTTCACTGGAAACCAGATTTCTTCTATGGCCAATTCAAATTGT
TATAGACCATGTTATGCTTCTATGGTTCCTGCCTGAGTTTATCAAACTAGCACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.381350821
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017