Detail information of Zm00001d043855_circ_g.2


General Information
CircRNA Name Zm00001d043855_circ_g.2
ID in PlantcircBase zma_circ_007831
Alias Zm03circ00104, GRMZM2G077607_C2
Organism Zea mays
Position chr3: 212185811-212186290  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI2
Parent gene Zm00001d043855
Parent gene annotation DUF1639 family protein
Parent gene strand +
Alternative splicing Zm00001d043855_circ_g.1
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d043855_T003:2
Zm00001d043855_T002:1
Zm00001d043855_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCTTGATTTTTATCATGCAGTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGA
CGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgaccgtcgaggatcgatcaggcgggcag
aagcggtcgtcgccggacaagacgcataggtccaccatggatggcgtctaccaccatcaccacc
accaagag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 364
Transcript exons: 212185811-212186096,212186213-212186290
GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACGCATAGGTCCACC
ATGGATGGCGTCTACCACCATCACCACCACCAAGAGTCGCCGTTGACGGGCAACGGCGTCGCCA
CCGCCGGTGAGAAGCTAGGCGTGGAGCGGTTCGAGCTGCCGCTGATCTACATCTCGCTGTCGCG
GAAGGAGAAGGAAGACGATTTCCTTGCGATGAAGGGCACCAAGCTGCCCCAGCGGCCCAAGAAA
AGGGCTAAGAACGTGGACAAGACCCTCCAATTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGA
CGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG

Genomic sequence GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACGCATAGGTCCACC
ATGGATGGCGTCTACCACCATCACCACCACCAAGAGTCGCCGTTGACGGGCAACGGCGTCGCCA
CCGCCGGTGAGAAGCTAGGCGTGGAGCGGTTCGAGCTGCCGCTGATCTACATCTCGCTGTCGCG
GAAGGAGAAGGAAGACGATTTCCTTGCGATGAAGGGCACCAAGCTGCCCCAGCGGCCCAAGAAA
AGGGCTAAGAACGTGGACAAGACCCTCCAAGTATTAAACGCCTGCCCTGAGATCGATTTGATCC
TCTATTTCTAACCCGATTTCCAAATCGATCTCTGCTCTCAAAACTTAACATGTGCTCTTCCCCC
TTGATTTTTATCATGCAGTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGT
ACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.209206143
Functional Information
Coding potential Y
Potential coding position 212186279-212185917(+)
212185876-212185864(+)
212185878-212185955(-)
Potential amino acid sequence MREEGPSRIDQAGRSGRRRTRRIGPPWMASTTITTTKSRR*(+)
MDGVYHHHHHQESPLTGNGVATAGEKLGVERFELPLIYISLSRKEKEDDFLAMKGTKLPQRPKK
RAKNVDKTLQFVFPGMWLSDLTRGRYEVREKKCVKKDRRGSIRRAEAVVAGQDA*(+)
MVDLCVLSGDDRFCPPDRSSTVLLHAFLLPHLVPSPRQIGQPHTREDKLEGLVHVLSPFLGPLG
QLGALHRKEIVFLLLPRQRDVDQRQLEPLHA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020;Zhang et al., 2019