Detail information of AT2G03800_circ_g.1


General Information
CircRNA Name AT2G03800_circ_g.1
ID in PlantcircBase ath_circ_012713
Alias Ath_circ_FC1158
Organism Arabidpsis thaliana
Position chr2: 1156963-1157418  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT2G03800
Parent gene annotation D-aminoacyl-tRNA deacylases
Parent gene strand +
Alternative splicing NA
Support reads 6
Tissues whole_plant
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered AT2G03800.1:2
AT2G03800.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGCCTGGATGGGCGGCGTTGCCAAGCACTAGAATTGGTCCATGGTTTCGTCTTTTGAAGAAA
ATGGCTGAAGCTCATGGTTTAGTTCCTGAGTTTGAGggacataaagagttttagtaacaagcaa
acgagagtgattcaacacgatagatctatagtaaaagaagacgatctcgatttacgttgggaag
aagctacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACATAAAGAGTTTTAGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTAAAA
GAAGACGATCTCGATTTACGTTGGGAAGAAGCTACCGGTGAAGTTGTTGATGAAGTCATCTTCC
TCAGCCGTCACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGTAGTGCATC
AAAATCCAAACTTTTGATTAGGGCTTTGTTCTTTTTACGATTTTCTGAAAGATTCAAACTTTGT
ATTTGGGTTTTGGTTGTTTTATGTTTTCCTGAAGGATGTTTTGGTTGATAAGTGTAGGAGTGCT
TCATCTAAAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCTGGATGGGCGGCGTTGCCAAGC
ACTAGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGTTTAGTTCCTG
AGTTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.170572916
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a