Detail information of 4_circ_ig.5


General Information
CircRNA Name 4_circ_ig.5
ID in PlantcircBase ath_circ_029912
Alias Ath_circ_FC2562, Ath_circ_FC4815, Ath_circ_FC5017, Ath_circ_FC5135, AtciR137
Organism Arabidpsis thaliana
Position chr4: 5059540-5063374  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method circRNA_finder, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ig.3 4_circ_ig.4
Support reads 2
Tissues inflorescences, leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTTCTAATTTCCTTGTGACCGTGTATGCATGCAACAGATAGCAGCTGGGCTATAACAGACGA
AATAGAGATGCGTCTGTAAAGCAGGTTGCAAGGTACctcagtagaatgttctggagatgtagtc
atccatatctgcttgagtgtactcagcaagcatgaccggttcttgatgtggctccgccatctcc
tcgtcatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 243
Transcript exons: 5059540-5059625,5059660-5059760,5063319-5063374
CTCAGTAGAATGTTCTGGAGATGTAGTCATCCATATCTGCTTGAGTGTACTCAGCAAGCATGAC
CGGTTCTTGATGTGGCTCCGCCCAGGTTGTGAAGCACGTCGCTCATGTGTTCTACGACCCGACA
TTATTCGACCCTTAATTGATGAATGTACAGTTCTAGCACTCTTCCTCCTCTTGTGTTCCAGCTG
GGCTATAACAGACGAAATAGAGATGCGTCTGTAAAGCAGGTTGCAAGGTAC

Transcript length: 376
Transcript exons: 5059540-5059686,5060121-5060153,5063179-5063374
CTCAGTAGAATGTTCTGGAGATGTAGTCATCCATATCTGCTTGAGTGTACTCAGCAAGCATGAC
CGGTTCTTGATGTGGCTCCGCCATCTCCTCGTCATTATGCTCGATCGCAACCCCAGCAGGTTGT
GAAGCACGTCGCTCATGTGCCCTGCTGTTACTCCAGCTGTTATTCATTTCCTGGTTGCTCTTGC
TCATCTACAATGTCAGCCATTGTGTCTGTTTCTGTCTGTTCTCTAAGTTGGCGAGCAATACGGT
CGATGTTATCGTTGAATAGGAGGTTCTAATTTCCTTGTGACCGTGTATGCATGCAACAGATAGC
AGCTGGGCTATAACAGACGAAATAGAGATGCGTCTGTAAAGCAGGTTGCAAGGTAC

Transcript length: 466
Transcript exons: 5059540-5059710,5060006-5060153,5063228-5063374
CTCAGTAGAATGTTCTGGAGATGTAGTCATCCATATCTGCTTGAGTGTACTCAGCAAGCATGAC
CGGTTCTTGATGTGGCTCCGCCATCTCCTCGTCATTATGCTCGATCGCAACCCCAGCAGGTTGT
GAAGCACGTCGCTCATGTGTTCTACGACCCGACATTATTCGACTGAGAAAGATGTTGTCCCAAA
ACCAGTAGATCGCACTCTCGAGCTTTTACTCTCATCATGCGATCGAGTAATTCATAAAAAAAAT
TGATTTTTTTTATTTGAACACCGGTTGCATCCCTGCTGTTACTCCAGCTGTTATTCATTTCCTG
TTCTCTAAGTTGGCGAGCAATACGGTCGATGTTATCGTTGAATAGGAGGTTCTAATTTCCTTGT
GACCGTGTATGCATGCAACAGATAGCAGCTGGGCTATAACAGACGAAATAGAGATGCGTCTGTA
AAGCAGGTTGCAAGGTAC

Transcript length: 514
Transcript exons: 5059540-5059756,5060018-5060153,5063214-5063374
CTCAGTAGAATGTTCTGGAGATGTAGTCATCCATATCTGCTTGAGTGTACTCAGCAAGCATGAC
CGGTTCTTGATGTGGCTCCGCCATCTCCTCGTCATTATGCTCGATCGCAACCCCAGCAGGTTGT
GAAGCACGTCGCTCATGTGTTCTACGACCCGACATTATTCGACCCTTAATTGATGAATGTACAG
TTCTAGCACTCTTCCTCCTCTTGTGTGTCCCAAAACCAGTAGATCGCACTCTCGAGCTTTTACT
CTCATCATGCGATCGAGTAATTCATAAAAAAAATTGATTTTTTTTATTTGAACACCGGTTGCAT
CCCTGCTGTTACTCCAGCTGTTATTCATTTCCTGTCTGTTTCTGTCTGTTCTCTAAGTTGGCGA
GCAATACGGTCGATGTTATCGTTGAATAGGAGGTTCTAATTTCCTTGTGACCGTGTATGCATGC
AACAGATAGCAGCTGGGCTATAACAGACGAAATAGAGATGCGTCTGTAAAGCAGGTTGCAAGGT
AC

Genomic sequence CTCAGTAGAATGTTCTGGAGATGTAGTCATCCATATCTGCTTGAGTGTACTCAGCAAGCATGAC
CGGTTCTTGATGTGGCTCCGCCATCTCCTCGTCATTATGCTCGATCGCAACCCCAGCAGGTTGT
GAAGCACGTCGCTCATGTGTTCTACGACCCGACATTATTCGACCCTTAATTGATGAATGTACAG
TTCTAGCACTCTTCCTCCTCTTGTGTTCCATTGGCTCATGAGACGAGTGCCTTGCGGAAACTTG
TGGAACGGTGTGGTCCCTTTGTTGATAGGTGGATTGCCTTGGTGGGAGAAAGTCGTGGCAGCTG
GATGGCATGTCTTCAGGCGGGTTGTCATTGAAGTCCTGTCGGGCATTTTCACTTCTCCTTGCGA
TTGAGTGGTTTGGGCAATTCCACTAAGAGACCACTCGATCACACCACTTCCATGTTGCGATCGA
GTAGTTTGACATTTTTGTTGAGAAAGATGTTGTCCCAAAACCAGTAGATCGCACTCTCGAGCTT
TTACTCTCATCATGCGATCGAGTAATTCATAAAAAAAATTGATTTTTTTTATTTGAACACCGGT
TGCATCCCTGCTGTTACTCCAGCTGTTATTCATTTCCTGAGAATCAAAACCAAAACCAAAACAA
ATCAAAAGTAAAAAAAAAAAAAAAAAACTATATACATGGATAGGCATGGGACTTCCTCCCAAGT
GAGCTTGTTTTAAGTCTCTAGCTTGACTCCTCACACTCATTAGGCTCAAGGAGGGTGATAGAGT
AGAGTTGACGTCTCCTCTGCTTCCTTAGTAGATACAACATCAAATTCAGCATGCTCTCGTGAAA
GGTCTGTAATTGAGTACTCAATGGCCCTTTCTTGGTAAGCTCCTTTTTCATCATCTGGATAGTC
GTCTTTTCTAGACAGTTCTAATGTGAATTCACATCCTTCTTTTCTAACCATAGGAATAACTTCA
TCATTTGGGAAGTCCTTGATGTCGAGTGGTGCTTTGTTGGCTTTCCCATGGAGCTCCTTGACTT
GATCTTTCAGCTCTTTCACAGTGTGTGTTAGCTCTCTTATAGCTCTATTATGCCATTTAGATCT
CTCCTTGAGTTCTAACCAATCATATGATGTCCTCATGCTTGACTTTAGCTGTTTGGTTGAGCAC
TCTAGTCGAGTATCAATTGAGCCTTCCTCGTTCAATGCAACATCCTCTCTTTCTAACACAATGA
CACCTTTAAAGATCTCTGATCCTGGTACTCTGTTGTGTGAGTCTAATGACATCTCATAGCTCAA
GGTCTCACTGGAGAGAAATCCAGCTTCACTACTTTTGGTCAAAGCAGTTTGAAGGTGATCTTTG
TCAGTAAGTTCCTCTAACAGTTCATTAGCTAGCTGACCCATTTCTTCAACTAAGAAGGTTTGTC
CTTCTATTGTTGGCTTCTTCATAGTGTCCCTGATTTCAAACTTCATTTTGAAATCCTCCCCCAG
ATTAAGATTAATTTTTCCTTTCTTAACATCTATGACTGCTCCACCTGAAGCTAAGAAAGGTCTT
CCTAAGATCAGAGGATCCTTAGATTCTTCATCCATCTCAAGCACAACAAAATCAGTAGAGACCT
CTACTCCATTAATCATTACTGACACACCCTCTAACAGGCCAAAAGGTCTCCTTGAAGTCCTATC
AGCAAGAATCAAGGTTAGGTCACAAGGCTTGTACTGAACGAATCCTAGCTTCCTTGCCACAAAG
AGCGGCATTATGCTGACTGAGGCTCCTAGATCACATAGACAATTGTTGAAAGGCAATTGTCTAA
TGGAGGATGGTAGAGTAAAAGATCCTGGATCTTCCAACTTTTCTTGAACAATCTTCTTTTGAGT
GATTGCACTACACTTATGACTTAATACCACCATTCCTTGGACTTCTTTGATCCTTTCTGTAATC
AGGTCTTTCACGTACTTGTGCTTGTTAGGTACTAGCGCGAGACAGTCCACTAAAGGCATATCCT
TTATCTGTTTTTCCAGGAGGTCTCGATATTTCGCAACCAGAACTTTCTTAAATCGACCAGGGAA
TGGAAGCGGAGGTTTGTAAGGTGGTGGCACGAAGACTGTATCTTTGGTCTTTTGCTGCTGTCGG
TTTTGCAACGAAGGTAGTAGCTGGAGGAGCTTGTGGTCGAGTGCTTTGACTGTCAAGGATGGCC
TCTTCGATTGTTTTCTCAGCCAAAACATCATCTTGATAAAAATCCTCCCCCTCTAGAATCACAC
TGTCCTCAGTGTTTAATGTAGGGACATGTCGAGTTGGCAGCTCTCGATCATTTCTGATAGTGAT
GGCATGGGCAGTGGCATACTCCTTTGGATTCCGGATTGCTTTCCCTGGAAGCTGGCATGGGTTG
TTGTTAACAGATGGTGAAGCGAGGATGCCTTCCACATATCTCATCCTAGTGCCTAGTGATTCAA
ACTTACTGTTCAGTTTGACACCTTGTCGGTCGACTTTGTTGTTTAATTCAGCCAGGTTCTTAGC
GATTTCCATTGCTCATGTGGCTTGTCCTTGAATGAGTTGCTGGAGCATAGTCATTATGTCTAAA
TTCTGAGGCCAAGGTGCTTGTTGTTGTTGTGGTGTGAAACCAGGTGGTGGCTGTTGTTGTTGAT
ATCCTCCCTGAAACTGCTGCTTTGGAATGAACCCTTGGCTTTGGTTGTAAGTAACAAACGGTTT
GGGTTGGTTCTGCTGCTGCTGCTGATGAGGGTAGACTTGGTCCTGAGGGTTGGCGACACTGGTG
CTTCTATATGACAGATTAGGGTTGGGTCTGTAATTATTGTACCCTTGTTGTAGCCACCTTTATT
CTGAACATAGCTGATTTCAGCACACTGATCATTCTCCCCCTCTTGTACTTGGAATGATTCATCT
TCAGAGATGAAGTGAACATGTTTCTGCTACATTTGGACAATTTTGTCTAGTTTGTCATTGAGAG
CTCTCATCTCTCTATGGTGCTTGTAATCAAAGTCAGAACTGGTGTGGATGCTTCTGTCATAGTC
TTCATTGTAATTGCCATCTGACTGAGTAAAGTTTTCAACTAGCTCCCACCCGTGTTCAACATCC
TTCTTCAGGAAATTCCCATTTAAAGCGATGTCAAGCAACATCCTTATCTTAGGCAAGACGCCTC
TGTAGAGTGTGCTGAGAAGAGAAGCTTGCTTAAATCCGTGATGAGGGCATTTGGTTTGATAACC
CTTAAATCGCTCTCAAGCTTCACAGAAGCTTTCATTTTGCTTCTGAATAAATCCGAATATCTCA
TTCCGGAGTCTTGCAGTTCTGGAGTTGGAGAAGAATTTTGTTAAGAAAGCCTTTTTGCAGTCAT
CCCAGGTCGTGATTGAATTCTGGGGTACCGTCTTTTCCCAAAGATGGGCTTTATCTCGAAGTGA
GAATGGAAACAAGCGAAGCTTGAAACCATCTTTACTAACTCCATTGATTTTAGTAAGGCCACAT
AGCATTTCAAACTCATCAAGATGATCTAGCGGATCCTCCATTGGCAGGCCATGAAACTTGTTCC
CCTGAACCATTGCAATGAAACCACTTTTGATCTCAAAGTTGTTGTTCTGTACTGGAGGTGGAAC
AATTCCATGACGCCGGTTGTGGTTGTGAGGGAAGTCACCAGCACCAATGTTGGTAGGTTGCTCT
TGCTCATCTACAATGTCAGCCATTGTGTCTGTTTCTGTCTGTTCTCTAAGTTGGCGAGCAATAC
GGTCGATGTTATCGTTGAATAGGAGGTTCTAATTTCCTTGTGACCGTGTATGCATGCAACAGAT
AGCAGCTGGGCTATAACAGACGAAATAGAGATGCGTCTGTAAAGCAGGTTGCAAGGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.45813305
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress