Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | POPTR_0003s03360_circ_g.2 |
| ID in PlantcircBase | pop_circ_000911 |
| Alias | Chr01:12242426-12245075 |
| Organism | Populus trichocarpa |
| Position | chr3: 3745792-3748441 JBrowse» |
| Reference genome | Populus trichocarpa genome v3.0 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | POPTR_0003s03360 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | POPTR_0003s03360_circ_g.3 |
| Support reads | NA |
| Tissues | stem xylem |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | POPTR_0003s03360.1:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.103689582 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
3748428-3745794(-) |
| Potential amino acid sequence |
MGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDLSLRKPIILMPRRTDSPDYLKLDVV HITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSGTELGESIIQDVNGVSILIRRSLRD LLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISETPHTVPPLNHDSVASSADVVKPIAL QDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDASLATIKVSGAWLLYKSNNAGEGFL SATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSDDENQHISDLNVTKQDEIKPVPTML IFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTVGDMLSNEESRTPMHEVDAVVLDQP IYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKDRQGANLSAPSKEAIIYVGSGKELQ FKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDLSLRKPIILMPRR TDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSGTELGESIIQDVN GVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISETPHTVPPLNHDSV ASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDASLATIKVSGAWL LYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSDDENQHISDLNVT KQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTVGDMLSNEESRTP MHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKDRQGANLSAPSKE AIIYVGSGKELQFKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDL SLRKPIILMPRRTDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSG TELGESIIQDVNGVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISET PHTVPPLNHDSVASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDA SLATIKVSGAWLLYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSD DENQHISDLNVTKQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTV GDMLSNEESRTPMHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKD RQGANLSAPSKEAIIYVGSGKELQFKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTS EIEGSPALKLDLSLRKPIILMPRRTDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTI KVEDINLNVGSGTELGESIIQDVNGVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQI ITECATSNISETPHTVPPLNHDSVASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLV ELCLYAGVARDASLATIKVSGAWLLYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPE KIGYSLLHLSSDDENQHISDLNVTKQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDF LLAVAEFFVPTVGDMLSNEESRTPMHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFT YDGKGGILHLKDRQGANLSAPSKEAIIYVGSGKELQFKNVVIK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Liu et al., 2021 |