Detail information of POPTR_0003s03360_circ_g.2


General Information
CircRNA Name POPTR_0003s03360_circ_g.2
ID in PlantcircBase pop_circ_000911
Alias Chr01:12242426-12245075
Organism Populus trichocarpa
Position chr3: 3745792-3748441  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0003s03360
Parent gene annotation NA
Parent gene strand -
Alternative splicing POPTR_0003s03360_circ_g.3
Support reads NA
Tissues stem xylem
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered POPTR_0003s03360.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTGGTTGTGAACCACTTCTCAGAATTTGTTACTTGATCTTTTAATTTGACAAAATTTTTTGA
ATTGTTGGGAATGAGACCCATAAAGTAACTCACAACcttgatcacaacatttttaaactgcaac
tctttcccacttccaacatatataatagcctccttgctgggtgcagagagattagctccctgtc
tatctttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGATCACAACATTTTTAAACTGCAACTCTTTCCCACTTCCAACATATATAATAGCCTCCTTG
CTGGGTGCAGAGAGATTAGCTCCCTGTCTATCTTTTAAATGCAATATTCCACCTTTACCATCAT
AAGTGAAATGATCAAATCTTTCATCATCAACAATTAAAGGTCTCAATGGAGAGAGAGAGATTTC
AGCAGAGGATTGCTGATAAATTGGCTGATCCAGAACAACTGCATCAACCTCGTGCATGGGGGTT
CTACTTTCCTCATTTGACAGCATATCACCTACTGTTGGAACAAAAAACTCAGCAACAGCCAGAA
GAAAATCAAGTGCAACGAGCAGTTGTGGGCGTTGGACACAGAGAGAAATAAATGTTGAGTATTG
ACCAAATTTTGCATCAAATATGAGCATTGTAGGGACTGGTTTGATCTCATCTTGTTTCGTCACA
TTTAAATCAGATATATGCTGGTTTTCATCATCAGATGACAAGTGAAGGAGACTATAACCAATCT
TCTCAGGCATTCCTACCGCCAGCCTAAACTCTTCTTCGGTTCCCTCACGATCATCAATCACAGT
GAAGCCTTTAAGTGTTGCTGAGAGAAAACCTTCCCCTGCGTTATTAGACTTGTAGAGGAGCCAA
GCACCACTAACCTGCATGGAACCAGGCTAGAAAATTAACTATAGAACACTACATAACACTGCAA
GAAATGAAAATAAGCAGGATGAGGAATGTTGGACCATGAACCTGTCAAAACAAAGATGAAAATT
AAGGCGGCAGTAGTTTTACTTCATCTTAGGTTGAATTGCTGCAATTAGAGGGAGAGAGGGGGGG
GGGAGATCATGGTAATTTTTAAGGCAAATAATAATTGCTGAATAAGATGATAGGGTACATGGGC
ACGAGGATTTAAACTGGTGTCCCAAGATATCAAGGCATCCCATAAAAGTTGCAGCCATCATGGG
CATAATCGTCAACAAATACCATATTCTCTTTAGTATACGAATTTTAGACAACTTCACTGGAAAT
GAAAAACACATTCTGTAATTAAATTAAGTGTAATGTTAATTTTGATGCAAACAAACTTTAGCAA
GTGGCCATAATATATGCATAAGCTAAAAGACTCTTAAGAAAAAAAGACTAAGCAATTGAAAGAT
CATCCAAGGCTACAACAAACATGACCACAGCTGCTGCCCACTATTGTAACTTAAAGCTCTTGCA
GATATAATTTTTAAATTGCAACCATAACACATGATACCAAAGTCATTTGATTCCATGATGGGTA
CAAAAAAGGAGATTGGAAAAAGAGTTGCATGCACCATAATGATTTTAAGCAGAGACTATCCATG
AGCTACTAGTCAAGATCAAAAGGGAGATAACTGTATGAAGAAATTTGTGAGAGAGCATATGTAA
TTAAATGAAACATTACCTTTATGGTGGCCAGCGATGCATCTCTGGCAACCCCAGCATATAAGCA
CAATTCAACTAGATTGATCGCAACAGAAACTTTCAAAGAAATCCAGGCTTCCCCATTCCGTGTC
TCAGCTTCAACACCACTTGGATCCTGAAGAGCAATAGGTTTTACAACATCAGCAGAAGATGCTA
CAGAGTCATGGTTCAGTGGGGGCACAGTGTGTGGAGTCTCGGAAATATTTGACGTTGCACATTC
AGTGATAATCTGGTAATCCCTGCTTGTCAGAGCTGCTTTTAACTCCTCCATCTTAAAAACAATA
TTAGATACAAGTATGCACTTCAGTGTCCGCGCATAAATTAAACAATGGAAACAAAAAGAATATC
ACAGAGAAAGTAACAGATTAATAGTAATTAAGAAAATAAAAGTGGAGATACCAACCCCACAGAA
CACAATTCAATACCTTGATTGCAGCTTCTGTAATTGGTATTTGATGCAACAGGTCTCGAAGTGA
CCTACGAATGAGAATAGAAACCCCATTTACATCTTGGATTATGCTTTCACCTAATTCTGTTCCA
CTGCCAACATTTAAATTGATGTCCTCCACCTAGAAGTCATAAGAACAAAATGAATAAACTGGTC
CACAAGATAGAATACCATATGGTTCTGGTACTTGACAGAAATCAATAACTCAAATCACAAGAAA
ACTTATGGGCATGGGAAAATTTGATAGTCACAACAAACCTTTTGATTAATTTATACTACAATAG
GTCAAAAGGAAAGAGCTAAGCATAAACTTTTTCACTTGGATCACTAATTAAAGAAGCCTACTCA
TCAAATCTTGTCCTGCTATAATGCTCACCTTAATTGTTAATATTTCTAAATGAACAGCATGCAA
CTCCCCTTTGCTGCCACCAAGCCATTGAAAAGTGTTCTGAATGGTTATGTGAACCACATCAAGT
TTCAAGTAACTGCCCCAAGAAATTTCAAAAGATTAATAGGATATGTCAGCAATCAAAGTAAAAT
ATAATTATTCACTAAGCCTAGCTGCAAACTTACTCAGGACTATCTGTTCTTCGAGGCATCAATA
TTATAGGTTTCCTGAGTGAAAGATCCAACTTCAGAGCTGGTGATCCTTCAATCTCACTGGTTGT
GAACCACTTCTCAGAATTTGTTACTTGATCTTTTAATTTGACAAAATTTTTTGAATTGTTGGGA
ATGAGACCCATAAAGTAACTCACAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.103689582
Functional Information
Coding potential Y
Potential coding position 3748428-3745794(-)
Potential amino acid sequence MGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDLSLRKPIILMPRRTDSPDYLKLDVV
HITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSGTELGESIIQDVNGVSILIRRSLRD
LLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISETPHTVPPLNHDSVASSADVVKPIAL
QDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDASLATIKVSGAWLLYKSNNAGEGFL
SATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSDDENQHISDLNVTKQDEIKPVPTML
IFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTVGDMLSNEESRTPMHEVDAVVLDQP
IYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKDRQGANLSAPSKEAIIYVGSGKELQ
FKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDLSLRKPIILMPRR
TDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSGTELGESIIQDVN
GVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISETPHTVPPLNHDSV
ASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDASLATIKVSGAWL
LYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSDDENQHISDLNVT
KQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTVGDMLSNEESRTP
MHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKDRQGANLSAPSKE
AIIYVGSGKELQFKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDL
SLRKPIILMPRRTDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSG
TELGESIIQDVNGVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISET
PHTVPPLNHDSVASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDA
SLATIKVSGAWLLYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSD
DENQHISDLNVTKQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTV
GDMLSNEESRTPMHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKD
RQGANLSAPSKEAIIYVGSGKELQFKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTS
EIEGSPALKLDLSLRKPIILMPRRTDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTI
KVEDINLNVGSGTELGESIIQDVNGVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQI
ITECATSNISETPHTVPPLNHDSVASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLV
ELCLYAGVARDASLATIKVSGAWLLYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPE
KIGYSLLHLSSDDENQHISDLNVTKQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDF
LLAVAEFFVPTVGDMLSNEESRTPMHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFT
YDGKGGILHLKDRQGANLSAPSKEAIIYVGSGKELQFKNVVIK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021