Detailed infomation of each circRNA
General Information | |
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CircRNA Name | POPTR_0003s03360_circ_g.2 |
ID in PlantcircBase | pop_circ_000911 |
Alias | Chr01:12242426-12245075 |
Organism | Populus trichocarpa |
Position | chr3: 3745792-3748441 JBrowse» |
Reference genome | Populus trichocarpa genome v3.0 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | POPTR_0003s03360 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | POPTR_0003s03360_circ_g.3 |
Support reads | NA |
Tissues | stem xylem |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | POPTR_0003s03360.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.103689582 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3748428-3745794(-) |
Potential amino acid sequence |
MGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDLSLRKPIILMPRRTDSPDYLKLDVV HITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSGTELGESIIQDVNGVSILIRRSLRD LLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISETPHTVPPLNHDSVASSADVVKPIAL QDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDASLATIKVSGAWLLYKSNNAGEGFL SATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSDDENQHISDLNVTKQDEIKPVPTML IFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTVGDMLSNEESRTPMHEVDAVVLDQP IYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKDRQGANLSAPSKEAIIYVGSGKELQ FKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDLSLRKPIILMPRR TDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSGTELGESIIQDVN GVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISETPHTVPPLNHDSV ASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDASLATIKVSGAWL LYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSDDENQHISDLNVT KQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTVGDMLSNEESRTP MHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKDRQGANLSAPSKE AIIYVGSGKELQFKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDL SLRKPIILMPRRTDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSG TELGESIIQDVNGVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQIITECATSNISET PHTVPPLNHDSVASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDA SLATIKVSGAWLLYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSD DENQHISDLNVTKQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDFLLAVAEFFVPTV GDMLSNEESRTPMHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKD RQGANLSAPSKEAIIYVGSGKELQFKNVVIKVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTS EIEGSPALKLDLSLRKPIILMPRRTDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTI KVEDINLNVGSGTELGESIIQDVNGVSILIRRSLRDLLHQIPITEAAIKMEELKAALTSRDYQI ITECATSNISETPHTVPPLNHDSVASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLV ELCLYAGVARDASLATIKVSGAWLLYKSNNAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPE KIGYSLLHLSSDDENQHISDLNVTKQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDF LLAVAEFFVPTVGDMLSNEESRTPMHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFT YDGKGGILHLKDRQGANLSAPSKEAIIYVGSGKELQFKNVVIK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Liu et al., 2021 |