Detail information of Zm00001d043312_circ_g.9


General Information
CircRNA Name Zm00001d043312_circ_g.9
ID in PlantcircBase zma_circ_007783
Alias Zm03circ00083, zma_circ_0001239
Organism Zea mays
Position chr3: 196068882-196074167  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d043312
Parent gene annotation Ubiquitin carboxyl-terminal hydrolase 13
Parent gene strand +
Alternative splicing Zm00001d043312_circ_g.1 Zm00001d043312_circ_g.2 Zm00001d043312_circ_g.3 Zm00001d043312_circ_g.4 Zm00001d043312_circ_g.5 Zm00001d043312_circ_g.6 Zm00001d043312_circ_g.7 Zm00001d043312_circ_g.8
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d043312_T001:9
Zm00001d043312_T009:9
Zm00001d043312_T008:9
Zm00001d043312_T005:9
Zm00001d043312_T011:9
Zm00001d043312_T002:9
Zm00001d043312_T010:9
Zm00001d043312_T007:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAACCTTTCTTCTTCCTAATTCGTGATGGTGAAGCTTTGTCGGATATGAAAGTACGGATTCAG
AAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGattgacaatggtgatataatatgctacc
aaaagcactgtttgccagattcaatggatcgatatcgatatcctaccgtcccttctttctttga
atatattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.047323392
Functional Information
Coding potential Y
Potential coding position 196068934-196074164(+)
Potential amino acid sequence MDRYRYPTVPSFFEYIHNRQIVHFRLLEKPKEEGFSLELSKCSTYDDVVEKVAKQLRMDDPSKI
RLTQHNPSSQQPKPHFIKYRSLNYLSDMLHNHNQMCDILYYDILDIPLPELESMRSLKVAFQNA
ANHEMSFHIMRLPKSNSLLDLIEDLKSKVEISCNDAEFRFFGVYLHKICKVYQPGDKIDSVNDH
GPLYIEEVPEDEKNAGPHDRLVHVYHFEYNHHIQYFGEPFFFLIRDGEALSDMKVRIQKRLQVP
DEQFLKIDNGDIICYQKHCLPDSMDRYRYPTVPSFFEYIHNRQIVHFRLLEKPKEEGFSLELSK
CSTYDDVVEKVAKQLRMDDPSKIRLTQHNPSSQQPKPHFIKYRSLNYLSDMLHNHNQMCDILYY
DILDIPLPELESMRSLKVAFQNAANHEMSFHIMRLPKSNSLLDLIEDLKSKVEISCNDAEFRFF
GVYLHKICKVYQPGDKIDSVNDHGPLYIEEVPEDEKNAGPHDRLVHVYHFEYNHHIQYFGEPFF
FLIRDGEALSDMKVRIQKRLQVPDEQFLKIDNGDIICYQKHCLPDSMDRYRYPTVPSFFEYIHN
RQIVHFRLLEKPKEEGFSLELSKCSTYDDVVEKVAKQLRMDDPSKIRLTQHNPSSQQPKPHFIK
YRSLNYLSDMLHNHNQMCDILYYDILDIPLPELESMRSLKVAFQNAANHEMSFHIMRLPKSNSL
LDLIEDLKSKVEISCNDAEFRFFGVYLHKICKVYQPGDKIDSVNDHGPLYIEEVPEDEKNAGPH
DRLVHVYHFEYNHHIQYFGEPFFFLIRDGEALSDMKVRIQKRLQVPDEQFLKIDNGDIICYQKH
CLPDSMDRYRYPTVPSFFEYIHNRQIVHFRLLEKPKEEGFSLELSKCSTYDDVVEKVAKQLRMD
DPSKIRLTQHNPSSQQPKPHFIKYRSLNYLSDMLHNHNQMCDILYYDILDIPLPELESMRSLKV
AFQNAANHEMSFHIMRLPKSNSLLDLIEDLKSKVEISCNDAEFRFFGVYLHKICKVYQPGDKID
SVNDHGPLYIEEVPEDEKNAGPHDRLVHVYHFEYNHHIQYFGEPFFFLIRDGEALSDMKVRIQK
RLQVPDEQFLK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020; Ma et al., 2021b