Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d043312_circ_g.9 |
ID in PlantcircBase | zma_circ_007783 |
Alias | Zm03circ00083, zma_circ_0001239 |
Organism | Zea mays |
Position | chr3: 196068882-196074167 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d043312 |
Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 13 |
Parent gene strand | + |
Alternative splicing | Zm00001d043312_circ_g.1 Zm00001d043312_circ_g.2 Zm00001d043312_circ_g.3 Zm00001d043312_circ_g.4 Zm00001d043312_circ_g.5 Zm00001d043312_circ_g.6 Zm00001d043312_circ_g.7 Zm00001d043312_circ_g.8 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d043312_T001:9 Zm00001d043312_T009:9 Zm00001d043312_T008:9 Zm00001d043312_T005:9 Zm00001d043312_T011:9 Zm00001d043312_T002:9 Zm00001d043312_T010:9 Zm00001d043312_T007:9 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.047323392 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
196068934-196074164(+) |
Potential amino acid sequence |
MDRYRYPTVPSFFEYIHNRQIVHFRLLEKPKEEGFSLELSKCSTYDDVVEKVAKQLRMDDPSKI RLTQHNPSSQQPKPHFIKYRSLNYLSDMLHNHNQMCDILYYDILDIPLPELESMRSLKVAFQNA ANHEMSFHIMRLPKSNSLLDLIEDLKSKVEISCNDAEFRFFGVYLHKICKVYQPGDKIDSVNDH GPLYIEEVPEDEKNAGPHDRLVHVYHFEYNHHIQYFGEPFFFLIRDGEALSDMKVRIQKRLQVP DEQFLKIDNGDIICYQKHCLPDSMDRYRYPTVPSFFEYIHNRQIVHFRLLEKPKEEGFSLELSK CSTYDDVVEKVAKQLRMDDPSKIRLTQHNPSSQQPKPHFIKYRSLNYLSDMLHNHNQMCDILYY DILDIPLPELESMRSLKVAFQNAANHEMSFHIMRLPKSNSLLDLIEDLKSKVEISCNDAEFRFF GVYLHKICKVYQPGDKIDSVNDHGPLYIEEVPEDEKNAGPHDRLVHVYHFEYNHHIQYFGEPFF FLIRDGEALSDMKVRIQKRLQVPDEQFLKIDNGDIICYQKHCLPDSMDRYRYPTVPSFFEYIHN RQIVHFRLLEKPKEEGFSLELSKCSTYDDVVEKVAKQLRMDDPSKIRLTQHNPSSQQPKPHFIK YRSLNYLSDMLHNHNQMCDILYYDILDIPLPELESMRSLKVAFQNAANHEMSFHIMRLPKSNSL LDLIEDLKSKVEISCNDAEFRFFGVYLHKICKVYQPGDKIDSVNDHGPLYIEEVPEDEKNAGPH DRLVHVYHFEYNHHIQYFGEPFFFLIRDGEALSDMKVRIQKRLQVPDEQFLKIDNGDIICYQKH CLPDSMDRYRYPTVPSFFEYIHNRQIVHFRLLEKPKEEGFSLELSKCSTYDDVVEKVAKQLRMD DPSKIRLTQHNPSSQQPKPHFIKYRSLNYLSDMLHNHNQMCDILYYDILDIPLPELESMRSLKV AFQNAANHEMSFHIMRLPKSNSLLDLIEDLKSKVEISCNDAEFRFFGVYLHKICKVYQPGDKID SVNDHGPLYIEEVPEDEKNAGPHDRLVHVYHFEYNHHIQYFGEPFFFLIRDGEALSDMKVRIQK RLQVPDEQFLK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020; Ma et al., 2021b |