Detail information of Zm00001d025545_circ_igg.1


General Information
CircRNA Name Zm00001d025545_circ_igg.1
ID in PlantcircBase zma_circ_010316
Alias zma_circ_0000051
Organism Zea mays
Position chr10: 121850458-121850608  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGTAAAAGATACGTCAAAACAGATGTGATTTTTGCATCCATGCAGATGCGAAACAGGATTTTG
AATCCTAGCACcagtcaccatcccatcatcagcgacactgtactgtatagcaatcgggagatac
acgatactccaacgcgtaaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTCACCATCCCATCATCAGCGACACTGTACTGTATAGCAATCGGGAGATACACGATACTCCA
ACGCGTAAAAAAGCGTAAAAGATACGTCAAAACAGATGTGATTTTTGCATCCATGCAGATGCGA
AACAGGATTTTGAATCCTAGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.106512141
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b