Detail information of BGIOSGA033506_circ_g.1


General Information
CircRNA Name BGIOSGA033506_circ_g.1
ID in PlantcircBase osi_circ_008754
Alias Chr10:24982752_24983313(MH63RS2), Chr10:25480809_25481370(ZS97RS2), Chr10:24982752_24983313(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 22182193-22182754  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA033506
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033506_circ_g.2 BGIOSGA033506_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033506-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTAC
AAGACCATTGCCATCTCTACAGTTTTCTATCTTATTggcttccgcatccaatcagcactatacc
aagccccctttcaactggaaggctcctgctcttatcttgggtagggtaaccccagcccccaccc
ccttctta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCTTTCAACTGGAAGGCTCCTGCTCTTATC
TTGGGTAGGGTAACCCCAGCCCCCACCCCCTTCTTAATTAATTTATCTTCCTCCTCGATCCACC
AGTCGCATGGATCTATCTACACATACATAATTAATTAACCATATACTCCTATGAAAAATGAATA
TAACGCCTTTCCACACTTGTCAGAATACTTGTCTTGTGATTGCAGAACAACTGTCTGGTTAAAT
CTGCCAATTTGGCATTTTTTTAAATCTAATCACGGACTCCATAGTTGTATCCTAATATAAATAC
TTCATACATCTTCATTCATTGTAGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTC
CCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAAT
GTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACAT
ACTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATT
Conservation Information
Conserved circRNAs osa_circ_008197
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021