Plant Circular RNA Database

Detail information of PGSC0003DMG400021603_circ_g.114

			
						 General Information
					
						CircRNA Name
						PGSC0003DMG400021603_circ_g.114
					
						ID in PlantcircBase
						stu_circ_001346
					
						Alias
						chr09:61321519|61321763
					
						Organism
						
							Solanum tuberosum						
					
						Position
						
							chr9: 61321520-61321763  JBrowse»						
					
						Reference genome
						
							3.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							PGSC0003DMG400021603						
					
						Parent gene annotation
						
							Hydroxyproline-rich glycoprotein (HRGP)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							PGSC0003DMG400021603_circ_g.137 PGSC0003DMG400021603_circ_g.138 PGSC0003DMG400021603_circ_g.139 PGSC0003DMG400021603_circ_g.140 PGSC0003DMG400021603_circ_g.141 PGSC0003DMG400021603_circ_g.142 PGSC0003DMG400021603_circ_g.143 PGSC0003DMG400021603_circ_g.144 PGSC0003DMG400021603_circ_g.145 PGSC0003DMG400021603_circ_g.146 PGSC0003DMG400021603_circ_g.147 PGSC0003DMG400021603_circ_g.148 PGSC0003DMG400021603_circ_g.149 PGSC0003DMG400021603_circ_g.150 PGSC0003DMG400021603_circ_g.151 PGSC0003DMG400021603_circ_g.152 PGSC0003DMG400021603_circ_g.153 PGSC0003DMG400021603_circ_g.154 PGSC0003DMG400021603_circ_g.155 PGSC0003DMG400021603_circ_g.156 PGSC0003DMG400021603_circ_g.157 PGSC0003DMG400021603_circ_g.158 PGSC0003DMG400021603_circ_g.159 PGSC0003DMG400021603_circ_g.160 PGSC0003DMG400021603_circ_g.161 PGSC0003DMG400021603_circ_g.162 PGSC0003DMG400021603_circ_g.163 PGSC0003DMG400021603_circ_g.164 PGSC0003DMG400021603_circ_g.165 PGSC0003DMG400021603_circ_g.166 PGSC0003DMG400021603_circ_g.167 PGSC0003DMG400021603_circ_g.168 PGSC0003DMG400021603_circ_g.1 PGSC0003DMG400021603_circ_g.2 PGSC0003DMG400021603_circ_g.3 PGSC0003DMG400021603_circ_g.4 PGSC0003DMG400021603_circ_g.5 PGSC0003DMG400021603_circ_g.6 PGSC0003DMG400021603_circ_g.7 PGSC0003DMG400021603_circ_g.8 PGSC0003DMG400021603_circ_g.9 PGSC0003DMG400021603_circ_g.10 PGSC0003DMG400021603_circ_g.11 PGSC0003DMG400021603_circ_g.12 PGSC0003DMG400021603_circ_g.13 PGSC0003DMG400021603_circ_g.14 PGSC0003DMG400021603_circ_g.15 PGSC0003DMG400021603_circ_g.16 PGSC0003DMG400021603_circ_g.17 PGSC0003DMG400021603_circ_g.18 PGSC0003DMG400021603_circ_g.19 PGSC0003DMG400021603_circ_g.20 PGSC0003DMG400021603_circ_g.21 PGSC0003DMG400021603_circ_g.22 PGSC0003DMG400021603_circ_g.23 PGSC0003DMG400021603_circ_g.24 PGSC0003DMG400021603_circ_g.25 PGSC0003DMG400021603_circ_g.26 PGSC0003DMG400021603_circ_g.27 PGSC0003DMG400021603_circ_g.28 PGSC0003DMG400021603_circ_g.29 PGSC0003DMG400021603_circ_g.30 PGSC0003DMG400021603_circ_g.31 PGSC0003DMG400021603_circ_g.32 PGSC0003DMG400021603_circ_g.33 PGSC0003DMG400021603_circ_g.34 PGSC0003DMG400021603_circ_g.35 PGSC0003DMG400021603_circ_g.36 PGSC0003DMG400021603_circ_g.37 PGSC0003DMG400021603_circ_g.38 PGSC0003DMG400021603_circ_g.39 PGSC0003DMG400021603_circ_g.40 PGSC0003DMG400021603_circ_g.41 PGSC0003DMG400021603_circ_g.42 PGSC0003DMG400021603_circ_g.43 PGSC0003DMG400021603_circ_g.44 PGSC0003DMG400021603_circ_g.45 PGSC0003DMG400021603_circ_g.46 PGSC0003DMG400021603_circ_g.47 PGSC0003DMG400021603_circ_g.48 PGSC0003DMG400021603_circ_g.49 PGSC0003DMG400021603_circ_g.50 PGSC0003DMG400021603_circ_g.51 PGSC0003DMG400021603_circ_g.52 PGSC0003DMG400021603_circ_g.53 PGSC0003DMG400021603_circ_g.54 PGSC0003DMG400021603_circ_g.55 PGSC0003DMG400021603_circ_g.56 PGSC0003DMG400021603_circ_g.57 PGSC0003DMG400021603_circ_g.58 PGSC0003DMG400021603_circ_g.59 PGSC0003DMG400021603_circ_g.60 PGSC0003DMG400021603_circ_g.61 PGSC0003DMG400021603_circ_g.62 PGSC0003DMG400021603_circ_g.63 PGSC0003DMG400021603_circ_g.64 PGSC0003DMG400021603_circ_g.65 PGSC0003DMG400021603_circ_g.66 PGSC0003DMG400021603_circ_g.67 PGSC0003DMG400021603_circ_g.68 PGSC0003DMG400021603_circ_g.69 PGSC0003DMG400021603_circ_g.70 PGSC0003DMG400021603_circ_g.71 PGSC0003DMG400021603_circ_g.72 PGSC0003DMG400021603_circ_g.73 PGSC0003DMG400021603_circ_g.74 PGSC0003DMG400021603_circ_g.75 PGSC0003DMG400021603_circ_g.76 PGSC0003DMG400021603_circ_g.77 PGSC0003DMG400021603_circ_g.78 PGSC0003DMG400021603_circ_g.79 PGSC0003DMG400021603_circ_g.80 PGSC0003DMG400021603_circ_g.81 PGSC0003DMG400021603_circ_g.82 PGSC0003DMG400021603_circ_g.83 PGSC0003DMG400021603_circ_g.84 PGSC0003DMG400021603_circ_g.85 PGSC0003DMG400021603_circ_g.86 PGSC0003DMG400021603_circ_g.87 PGSC0003DMG400021603_circ_g.88 PGSC0003DMG400021603_circ_g.89 PGSC0003DMG400021603_circ_g.90 PGSC0003DMG400021603_circ_g.91 PGSC0003DMG400021603_circ_g.92 PGSC0003DMG400021603_circ_g.93 PGSC0003DMG400021603_circ_g.94 PGSC0003DMG400021603_circ_g.95 PGSC0003DMG400021603_circ_g.96 PGSC0003DMG400021603_circ_g.97 PGSC0003DMG400021603_circ_g.98 PGSC0003DMG400021603_circ_g.99 PGSC0003DMG400021603_circ_g.100 PGSC0003DMG400021603_circ_g.101 PGSC0003DMG400021603_circ_g.102 PGSC0003DMG400021603_circ_g.103 PGSC0003DMG400021603_circ_g.104 PGSC0003DMG400021603_circ_g.105 PGSC0003DMG400021603_circ_g.106 PGSC0003DMG400021603_circ_g.107 PGSC0003DMG400021603_circ_g.108 PGSC0003DMG400021603_circ_g.109 PGSC0003DMG400021603_circ_g.110 PGSC0003DMG400021603_circ_g.111 PGSC0003DMG400021603_circ_g.112 PGSC0003DMG400021603_circ_g.113 PGSC0003DMG400021603_circ_g.115 PGSC0003DMG400021603_circ_g.116 PGSC0003DMG400021603_circ_g.117 PGSC0003DMG400021603_circ_g.118 PGSC0003DMG400021603_circ_g.119 PGSC0003DMG400021603_circ_g.120 PGSC0003DMG400021603_circ_g.121 PGSC0003DMG400021603_circ_g.122 PGSC0003DMG400021603_circ_g.123 PGSC0003DMG400021603_circ_g.124 PGSC0003DMG400021603_circ_g.125 PGSC0003DMG400021603_circ_g.126 PGSC0003DMG400021603_circ_g.127 PGSC0003DMG400021603_circ_g.128 PGSC0003DMG400021603_circ_g.129 PGSC0003DMG400021603_circ_g.130 PGSC0003DMG400021603_circ_g.131 PGSC0003DMG400021603_circ_g.132 PGSC0003DMG400021603_circ_g.133 PGSC0003DMG400021603_circ_g.134 PGSC0003DMG400021603_circ_g.135 PGSC0003DMG400021603_circ_g.136 						
					
						Support reads
						NA
					
						Tissues
						stem
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-GG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						PGSC0003DMT400055632:1

General Information
CircRNA Name	PGSC0003DMG400021603_circ_g.114
ID in PlantcircBase	stu_circ_001346
Alias	chr09:61321519\|61321763
Organism	Solanum tuberosum
Position	chr9: 61321520-61321763 JBrowse»
Reference genome	3.0.38
Type	e-circRNA
Identification method	CIRI2
Parent gene	PGSC0003DMG400021603
Parent gene annotation	Hydroxyproline-rich glycoprotein (HRGP)
Parent gene strand	-
Alternative splicing	PGSC0003DMG400021603_circ_g.137 PGSC0003DMG400021603_circ_g.138 PGSC0003DMG400021603_circ_g.139 PGSC0003DMG400021603_circ_g.140 PGSC0003DMG400021603_circ_g.141 PGSC0003DMG400021603_circ_g.142 PGSC0003DMG400021603_circ_g.143 PGSC0003DMG400021603_circ_g.144 PGSC0003DMG400021603_circ_g.145 PGSC0003DMG400021603_circ_g.146 PGSC0003DMG400021603_circ_g.147 PGSC0003DMG400021603_circ_g.148 PGSC0003DMG400021603_circ_g.149 PGSC0003DMG400021603_circ_g.150 PGSC0003DMG400021603_circ_g.151 PGSC0003DMG400021603_circ_g.152 PGSC0003DMG400021603_circ_g.153 PGSC0003DMG400021603_circ_g.154 PGSC0003DMG400021603_circ_g.155 PGSC0003DMG400021603_circ_g.156 PGSC0003DMG400021603_circ_g.157 PGSC0003DMG400021603_circ_g.158 PGSC0003DMG400021603_circ_g.159 PGSC0003DMG400021603_circ_g.160 PGSC0003DMG400021603_circ_g.161 PGSC0003DMG400021603_circ_g.162 PGSC0003DMG400021603_circ_g.163 PGSC0003DMG400021603_circ_g.164 PGSC0003DMG400021603_circ_g.165 PGSC0003DMG400021603_circ_g.166 PGSC0003DMG400021603_circ_g.167 PGSC0003DMG400021603_circ_g.168 PGSC0003DMG400021603_circ_g.1 PGSC0003DMG400021603_circ_g.2 PGSC0003DMG400021603_circ_g.3 PGSC0003DMG400021603_circ_g.4 PGSC0003DMG400021603_circ_g.5 PGSC0003DMG400021603_circ_g.6 PGSC0003DMG400021603_circ_g.7 PGSC0003DMG400021603_circ_g.8 PGSC0003DMG400021603_circ_g.9 PGSC0003DMG400021603_circ_g.10 PGSC0003DMG400021603_circ_g.11 PGSC0003DMG400021603_circ_g.12 PGSC0003DMG400021603_circ_g.13 PGSC0003DMG400021603_circ_g.14 PGSC0003DMG400021603_circ_g.15 PGSC0003DMG400021603_circ_g.16 PGSC0003DMG400021603_circ_g.17 PGSC0003DMG400021603_circ_g.18 PGSC0003DMG400021603_circ_g.19 PGSC0003DMG400021603_circ_g.20 PGSC0003DMG400021603_circ_g.21 PGSC0003DMG400021603_circ_g.22 PGSC0003DMG400021603_circ_g.23 PGSC0003DMG400021603_circ_g.24 PGSC0003DMG400021603_circ_g.25 PGSC0003DMG400021603_circ_g.26 PGSC0003DMG400021603_circ_g.27 PGSC0003DMG400021603_circ_g.28 PGSC0003DMG400021603_circ_g.29 PGSC0003DMG400021603_circ_g.30 PGSC0003DMG400021603_circ_g.31 PGSC0003DMG400021603_circ_g.32 PGSC0003DMG400021603_circ_g.33 PGSC0003DMG400021603_circ_g.34 PGSC0003DMG400021603_circ_g.35 PGSC0003DMG400021603_circ_g.36 PGSC0003DMG400021603_circ_g.37 PGSC0003DMG400021603_circ_g.38 PGSC0003DMG400021603_circ_g.39 PGSC0003DMG400021603_circ_g.40 PGSC0003DMG400021603_circ_g.41 PGSC0003DMG400021603_circ_g.42 PGSC0003DMG400021603_circ_g.43 PGSC0003DMG400021603_circ_g.44 PGSC0003DMG400021603_circ_g.45 PGSC0003DMG400021603_circ_g.46 PGSC0003DMG400021603_circ_g.47 PGSC0003DMG400021603_circ_g.48 PGSC0003DMG400021603_circ_g.49 PGSC0003DMG400021603_circ_g.50 PGSC0003DMG400021603_circ_g.51 PGSC0003DMG400021603_circ_g.52 PGSC0003DMG400021603_circ_g.53 PGSC0003DMG400021603_circ_g.54 PGSC0003DMG400021603_circ_g.55 PGSC0003DMG400021603_circ_g.56 PGSC0003DMG400021603_circ_g.57 PGSC0003DMG400021603_circ_g.58 PGSC0003DMG400021603_circ_g.59 PGSC0003DMG400021603_circ_g.60 PGSC0003DMG400021603_circ_g.61 PGSC0003DMG400021603_circ_g.62 PGSC0003DMG400021603_circ_g.63 PGSC0003DMG400021603_circ_g.64 PGSC0003DMG400021603_circ_g.65 PGSC0003DMG400021603_circ_g.66 PGSC0003DMG400021603_circ_g.67 PGSC0003DMG400021603_circ_g.68 PGSC0003DMG400021603_circ_g.69 PGSC0003DMG400021603_circ_g.70 PGSC0003DMG400021603_circ_g.71 PGSC0003DMG400021603_circ_g.72 PGSC0003DMG400021603_circ_g.73 PGSC0003DMG400021603_circ_g.74 PGSC0003DMG400021603_circ_g.75 PGSC0003DMG400021603_circ_g.76 PGSC0003DMG400021603_circ_g.77 PGSC0003DMG400021603_circ_g.78 PGSC0003DMG400021603_circ_g.79 PGSC0003DMG400021603_circ_g.80 PGSC0003DMG400021603_circ_g.81 PGSC0003DMG400021603_circ_g.82 PGSC0003DMG400021603_circ_g.83 PGSC0003DMG400021603_circ_g.84 PGSC0003DMG400021603_circ_g.85 PGSC0003DMG400021603_circ_g.86 PGSC0003DMG400021603_circ_g.87 PGSC0003DMG400021603_circ_g.88 PGSC0003DMG400021603_circ_g.89 PGSC0003DMG400021603_circ_g.90 PGSC0003DMG400021603_circ_g.91 PGSC0003DMG400021603_circ_g.92 PGSC0003DMG400021603_circ_g.93 PGSC0003DMG400021603_circ_g.94 PGSC0003DMG400021603_circ_g.95 PGSC0003DMG400021603_circ_g.96 PGSC0003DMG400021603_circ_g.97 PGSC0003DMG400021603_circ_g.98 PGSC0003DMG400021603_circ_g.99 PGSC0003DMG400021603_circ_g.100 PGSC0003DMG400021603_circ_g.101 PGSC0003DMG400021603_circ_g.102 PGSC0003DMG400021603_circ_g.103 PGSC0003DMG400021603_circ_g.104 PGSC0003DMG400021603_circ_g.105 PGSC0003DMG400021603_circ_g.106 PGSC0003DMG400021603_circ_g.107 PGSC0003DMG400021603_circ_g.108 PGSC0003DMG400021603_circ_g.109 PGSC0003DMG400021603_circ_g.110 PGSC0003DMG400021603_circ_g.111 PGSC0003DMG400021603_circ_g.112 PGSC0003DMG400021603_circ_g.113 PGSC0003DMG400021603_circ_g.115 PGSC0003DMG400021603_circ_g.116 PGSC0003DMG400021603_circ_g.117 PGSC0003DMG400021603_circ_g.118 PGSC0003DMG400021603_circ_g.119 PGSC0003DMG400021603_circ_g.120 PGSC0003DMG400021603_circ_g.121 PGSC0003DMG400021603_circ_g.122 PGSC0003DMG400021603_circ_g.123 PGSC0003DMG400021603_circ_g.124 PGSC0003DMG400021603_circ_g.125 PGSC0003DMG400021603_circ_g.126 PGSC0003DMG400021603_circ_g.127 PGSC0003DMG400021603_circ_g.128 PGSC0003DMG400021603_circ_g.129 PGSC0003DMG400021603_circ_g.130 PGSC0003DMG400021603_circ_g.131 PGSC0003DMG400021603_circ_g.132 PGSC0003DMG400021603_circ_g.133 PGSC0003DMG400021603_circ_g.134 PGSC0003DMG400021603_circ_g.135 PGSC0003DMG400021603_circ_g.136
Support reads	NA
Tissues	stem
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-GG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	PGSC0003DMT400055632:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GGAGGTGACTTAACTGGTGGTGGAGGGGAAGAGTAGTAGTATGGGGGTGGTGGTGACTTAACTG
GTGGTGGTGGAGAACTGTAGTAGTATGGTGGAGGAGtgcttcttgtcatgggatttctttgggt
atttccagtcatagcatctgtagcaatagacttttccgacaaccttaacgatcaagggatgatg
aggaggat

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TGCTTCTTGTCATGGGATTTCTTTGGGTATTTCCAGTCATAGCATCTGTAGCAATAGACTTTTC
CGACAACCTTAACGATCAAGGGATGATGAGGAGGATAGTAAGAAGTAGGTGGTGGAGGGGAAGT
GTAGTAGTATGGTGAAGGAGGTGACTTAACTGGTGGTGGAGGGGAAGAGTAGTAGTATGGGGGT
GGTGGTGACTTAACTGGTGGTGGTGGAGAACTGTAGTAGTATGGTGGAGGAG

Sequences
Splice junction sequence	GGAGGTGACTTAACTGGTGGTGGAGGGGAAGAGTAGTAGTATGGGGGTGGTGGTGACTTAACTG GTGGTGGTGGAGAACTGTAGTAGTATGGTGGAGGAGtgcttcttgtcatgggatttctttgggt atttccagtcatagcatctgtagcaatagacttttccgacaaccttaacgatcaagggatgatg aggaggat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TGCTTCTTGTCATGGGATTTCTTTGGGTATTTCCAGTCATAGCATCTGTAGCAATAGACTTTTC CGACAACCTTAACGATCAAGGGATGATGAGGAGGATAGTAAGAAGTAGGTGGTGGAGGGGAAGT GTAGTAGTATGGTGAAGGAGGTGACTTAACTGGTGGTGGAGGGGAAGAGTAGTAGTATGGGGGT GGTGGTGACTTAACTGGTGGTGGTGGAGAACTGTAGTAGTATGGTGGAGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.827521072

Conservation Information
Conserved circRNAs	NA
PMCS	0.827521072

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2018

circRNA

Detail information of PGSC0003DMG400021603_circ_g.114

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