Detail information of BGIOSGA022068_circ_ig.1


General Information
CircRNA Name BGIOSGA022068_circ_ig.1
ID in PlantcircBase osi_circ_016922
Alias Chr06:658502_660358(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 979545-981410  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA022070_circ_ig.1 BGIOSGA022066_circ_igg.1 BGIOSGA022069_circ_ig.1 BGIOSGA022068_circ_igg.1 BGIOSGA022068_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGACTGGATTGAAACAGTGTCCTGATCAATATTACCAGCAATTAACAGAATTGGATGCCCAC
ATTTTATGCCATTTTCCAGAATACTGATATCTGCGAccagagctagctgccattggtgtgcagg
ttgcagaagaccaggtgtacgttctcgctctctatggcgtcgacaaccacgtctcaactctcaa
gccaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGAGCTAGCTGCCATTGGTGTGCAGGTTGCAGAAGACCAGGTGTACGTTCTCGCTCTCTATG
GCGTCGACAACCACGTCTCAACTCTCAAGCCAGGAATGTCTTAATTTGCCACCAATGCAGAATG
CTCCAAGCGACACCTCAACTCACCGCCTATTATGTTCCTTTTGCAAAAGTAACTCTCTTAGCAC
AAATAATAAGTAAAAAGATTTAGGGTATGGATATGTAAGTGAAAGGTTAATGTTTCGTACTATC
AAACATCTTAAACTGACCAAGAAAACACTACTACGTGGCTAATGAGTAATGAGCTCATCAGAAT
GAAAAATAAAATGACTAATAAAAGAAAAAGGAGAAAAATAGTTAACAAAAATTATTGTGAGTAT
TTGAGCATGGCTTAAATGAAATGATAAGATCCATACAGTAACCAGGAACTAGAATTCATCAAAT
AATGGCATGCCTTAGAGCAGGTACAATAGAAGGCTATAAACTAGCTGTAAACATATTTTAAAGA
GATAAAAGAAGATAGAGAAAAGCAGCATGCTACAGATTTGTAGCCAGCTGCAGCACGGACTCCA
AAACATAATGTGCGTATGGTAGGTGGGACCAGATATTAATAGTATAGTAAACAAATATTATATG
AATTGGCTATTAGTGACTATATATGAATTAGATCTAGCAATGGACTATACTATAAAACTTGCTC
TTAGTGGGGTCAATAGTCCCAGCAGCCATTAAGTCCTCGTACTTGCCAGTAGCAGCATTAAGTT
GTCATTAGCAAGAACCTGACTGTAGAGATCTAATAGTATTATTTTCAGTACTACGCAGCCGCAT
AATATTGAATCATGCATTAATAATGCTTGGAGTAACTAAAATGGTGTTCAAACTTCAAACCTTT
TCAGGGATTATACTGAAGGCCTTCCTTACAATTTCAACCTCAACCTACAGGAAGGGCGATACGA
TCTGTTGTTAATTGACCAAAAAGGTTCTACAATATGCCACCATGAAAATAATCTCCACCAAAGA
AAATAAGATGAACCCATAAATAATCACTTTCGATGTGTCGCAAAAATGATAGCTTCATTCACCC
ACCTTCTGCTAATCATTCTCGAGATTCTATGATGAAGTCGACTTTAGATGCCAGCCTCAAAAGA
GTATAGACACCAGCAACAGCAATAGCTTTCTCCACTGCATCCTAGCAAGAAAGCAAACAACTAA
CTGAATTAGCAGTGGATTACAAAAGAAAGTAGTGCAACTAAGACAATAATGCAGTTCATAAAAG
TGCCAGAAGTATATGAACTGACACTGCTAAATGCTGACACAGGGAATTTGACGGCTGATGAACA
ATACATGCACCACGAGTGATGGATTGAAGATCTAAAAAGAACATTCACCTTCTGATATGGACTA
TAGTGGGTACCAACCATAACACTTCCATTGCATTCAAAGCATCTTCCACCCAAAATTTCTTCTC
CTTTGAGCTCACTTTCAGCCTGCATGCCCATCGTAGTAATAAGTGCAAGCAGGAAGATCAGAAA
TTGAGAAATATAGATACAGAATCTGACTGAAAGAGTGTAGGGGGGGGGGGGGGGGGGTTAGAGT
GTATCTCCACTTGACTATTCACATTACATAGAGTTGTATTCTTGAAAGAAAAAAACAGTATATA
GATGTTGAAGCTCATATCACCTCCAATTGGAAAGTGATATCATCCAGGTTTTTGATTCTTGCAG
TCTCCATACTCCGATACACTTCCAATCTTATTGGCCACAAGGACTGGATTGAAACAGTGTCCTG
ATCAATATTACCAGCAATTAACAGAATTGGATGCCCACATTTTATGCCATTTTCCAGAATACTG
ATATCTGCGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021