Detail information of BGIOSGA019664_circ_g.3


General Information
CircRNA Name BGIOSGA019664_circ_g.3
ID in PlantcircBase osi_circ_015351
Alias Chr05:17044439_17049160(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 17328332-17332661  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA019664
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019664_circ_igg.1 BGIOSGA019664_circ_igg.2 BGIOSGA019664_circ_igg.3 BGIOSGA019664_circ_g.1 BGIOSGA019664_circ_g.2 BGIOSGA019664_circ_g.4 BGIOSGA019664_circ_g.5 BGIOSGA019664_circ_g.6 BGIOSGA019664_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-NN
Number of exons covered BGIOSGA019664-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGAGGAGTCAGGAGCTTGCTGCTTTGATGAGACCCCTTTCAAGGATATGTTTGTATCAGCAA
CTTCTCACAGAAGCGACCCAGATTCTGCTTCACAAGtgccatggagaaggccaaggtgtggcct
gagtttcagtacagtgagatgtgcttcagtgataggatcatcattgagctaagtgaagttggtg
tatccact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCCATGGAGAAGGCCAAGGTGTGGCCTGAGTTTCAGTACAGTGAGATGTGCTTCAGTGATAGG
ATCATCATTGAGCTAAGTGAAGTTGGTGTATCCACTGAACCCGTGGTATGTGTTGTTTCACTGT
TCAACTGTATCATTCTGTACAACAATTTTTTTTGTTAGGCTGGTATAGAATTTCGCGGTTGCTT
GAGGTTAAACTAATTTTTTTTGGCATTTCTATGCATGGGTTTGTTACAGGTTTATTAATTTTAA
TTTTAAATCTGGTTGGCTTTTGGGGGAAATAACCCAAATTGGGGTTAATTACCTTGGGAAAATT
AATCTCAAAAGAAGGGCTGGAATAATTAATTTCTTTCTTATTCATGGGAATATTGGAAGTTATT
ATTAATTAGTTCCCAAAAAGAATTTTTAAAAACTTTCAGTGTTTTCTTGTCATTATTTAGGTAG
TTTGTTGCTTTTTATGGGCTCTGATTTTCCTGTGATTGTTAAAATGCTTGGAGAAATTGGATAC
TGACCTGATATATTCTACAACCATATTATATTTGGTAGCACGAGTACACGATCCAAATAAGAAT
ATGAATAGGGGATGACAAATAAATGCTAGATATAGTTGTCTTAGTGTTTAAATATGGGTATTGG
CCATTTGGGTTTAGTTCTATATATAGGGATGACAAACTATTGTGCAATACTGGCTCATGACTAC
AAGCTGAAATTCTTAATTCTATATTTATCTATGTCCTCTTAAGATGTACACAATTTCTGTCAGT
TTTGTGAATTAAAATGGATCATATATGTTGCACTACATCCCTAAGCACATGATAAGAATAGTTT
TATGTCAGTTATCTCCAAGAAGCTTCATCATGAGTATTTTCTTTGAAACATTTGGTTCTTAGGA
GTACCATATAAACTTTGAATCTTAACCTGCAACATCTCAATGTTTCATTAAATAGCACATCAAA
GTTTTCATAATGTTTTAGCTCTTATTGTGCTACACTGCTATTGTGCCAGCCTGATCTTGCCCAG
AGTGAAGATGAAGATATCAATTCCGAAATCTGCAAATTAGAAGGCCAACTTCATAAAGAGGTAC
TACTTATATTCACTATGTGCGGCTGGATGCATGTGCATGCTCCTTGATCTATTTCACTATTTTC
AATATCTGATTAGTACCTGTCACATGCTCCTGTCACAAGAGGGTGAAGAAACCTTAGAGCACAT
TTGCAGTGAAAGATTCTATAATGTGCCTTTTGGTCTATCTGGATAAGTGAAATAACATGAATAA
ATTTGTCAAAAAGAGAACACTCATTGTATTACACAATAAATTTCACTGGTCAATGTTGCATTTT
CTTGACTTTGGAAAGCCAACAGCATCATTCTTTTGTGATGACTGAAGGGAGTGATGTGAAAATT
AATCTTAGTGTTTTTATGATGTGAAAGGTTGTAGATAAGAAAAACTTGCTACGGAAGCTGGATG
GCGTTCTTAGAACTAAAAAGGAGTCACAGCACAGGTATTTCACATCATTGTTTTGTTGGGAAAC
TATTTCTTGAGATTCAAGCCCTTACATCTATGTGGTTACCCTGTAACCAGGGAATTTTCACGGC
GTGCCATGGAAAGGCTTTTGCTGATAGCGTATGAGAAATACATGGTAAGTCTTCTGGGCGAGAA
ATACATGCTGATTGATGTTTCTTGTTTTATTTGTTGGGTTGGGTCAATAGCTAAGGTGAAGTGT
CTACTATGTAGTTTTCCTAGTTGCCAACACAGCCTTAACAATCTAACTCTGATTAAGCCTGCCA
ATGTTCGCTATTTGAGGCTTCATGTCTATATTGTGAATTTTCTTTTTTTTATTAGTAATGATTT
CTATTTATCCGTTGAATGTATAATGTCGAGTTTTAAAACTCCTGTTTCTATCTTTCATCGTCTT
TCGATATAAATTGCAAATTGTTCAGTGTCAAATACATAGGTAAATAATCGAATTTAGTTGTATG
AGCAATTATGTATTACTCCCTCCGTCCTAGAGTAAGTTCATTTTTGGTCCCTCCCATTTGTCCC
AAAATAAGTTCGGTTGTGAACAATCATTGCATTGTGAAAGTAGTGTATAAATGCATTGGGACTA
TATAAAGAGAGTAATAATTGCATTAGGATTTGATAAAGTGGGGTGTTTTCTAGTCTTTTTAGTT
TTGTATTGGTATGTGTGGGATGGTTGAAAAATGAACTTATTTTGGGACGGAGGGCCATTCTAAG
AGTTATTAATCTGTGGGACAAAAATTTCCGTGCTGTGGCTCCGTCACAATAGTATTGCATTCTG
TATTTTCACTGACAATTTAGCACATGCATATAACTTGTATGACTCCCATCCTCCAATTCATGCC
TGGCAAGTGGGAAGTGCTTGCATCAAATACTATTAGACACTTGTACACTGCTTAGAGTTAGCCT
TATGCCTAGTTTGAATCTGCAACTTGGTTCAGCTTTTCGGTGACACGTAAAACGAGGTAATCCA
TTACCGCTTGATTAATTGAGTATCAACTATAACAAACTTAAAAATTGGGTTTATTGATTTCTGA
AAGAAACTTCTATATATTCCTTTTTTTATTTTTCAAAAAGCGCACCGTTTAGTAGTTTCGAAAG
CGTGCTAACCGAAAATGTGGAAGTTGCAGTTTAGAGTTGAAGAAGAGAACGCAGCCTTAGGGTG
CATTTGGGAGGAGTTTGGAACTTCTCCCTGCACGGAAAATGAGGTGGCTCATTAGTGCATGATT
AATTAAGTACTAGCTAAAAAAATCTTGAAAAATGGATTAATGTGATTTTTTAATACAACTTCCC
TATAGAATTTGTTTTGCAAAAAACTGCACTGTTTAGCAGTTTGGGAAGCGTATGCGCGACAAAG
GAGGAAGTAGAAGTTGGGAAAGGGGAGAAAAGAACACACCCTTAGCCTGCCTCTAACCTCATCT
GAAAAGGTGCAACTCAAATTACTCTCCAGGGGTTATGAATTGAGCTACCGCATGTATTGACATG
ACCTCATCTAATACGTTTCATATTTGGTAGTTCAACTCTAATCTCATCTTGAAATCATGAAGTA
GAAATCATAAAGGTCAAGGGAGGTGACATGACAGGAGCCATCAGCCACTACCATGCCCTCCTTG
CATGACATGTATTAGGTCTAAGGGGCATTAGGGCATGTCCATCAGTTGAACTGAGCACAATCAC
CAGGGCTGTGTTCGCCATGAGGAGATTGAGAAGAAAACTCCAACGTTTGCCCCGCGCATGCTTT
CCGAACTGTTAATCGGTGTATTTTTTGCCAAAAAAAAAATCTATAGGAAAGTTGCTTTAAAAAA
TCATATTTAATCCCTTTTCAAGTTTAAAATAATTAATACTCAAATAATTATTTGCTAACGACTC
CTCTCGTCTTCCGTGTCATCAAGAGCCCCTGCCATCTAAAATAATTCATACAACAGTTGGGTCT
CTACCAATTAATACTTATTATATTTTATTCATTTTAATGGGCCTCAATCTTATCATCAGCATCA
TGGATACACCTATTTTCTCCTCGAAGTGGGTTCCTCCCTCGTGTATTGTGCCTCGCATCGATGT
TTGCAGAGAGACAGTCCCTCCTGTCTCTTCCCCCTTTCTATTCCATGTCATCAAAATTGCCAAG
CTGGCAGTTTTATTGGCCAGCTATTAATTGCTGTTGTTAACCAGACATTGGGGCGATGGTGACA
TTTTTAGAAGTATTCTAACAGTTGGATGTTGAAAATAAAATTTGAGACGGTGCAAAAATTAGTA
GCATATGTAGAAGTGGACACTCACTAGTGGCAACAGCTGAAATTTCCCATTATAATGTTGTTGC
AGTTATGGTGACTTTGCAGTAGCTTTTTAACCTAATTGGAGTCCCTTCTCTGTTTTTTTTTTTT
TTTTTGAGATGAAACTTGTCTCCCTCTATGTGGTAAATCATTTCATATTTTGAATTTATCACAC
TGACCAGTTCTTTAAGTTCATGTAGTCTTGCATTGTCTGGCAACTATGTTTCTGTTGGGCAATT
GATATGTTACTCTGTTGATGACCTTGTTTGCTTTGTGGACTTTAAGTTCACTATTTTTTGATAC
TTATTAAATAATTGATTGTTGTTACTGTGAAACTACAGGCCTTCTGTGGTTCTTCAAGTAGCAA
AAATGTAAATAGAGCTGGCAAACATGCTGCTCTAAGTTTTGTTAAACGAACAATAGCACGTTGC
CAGAACTATGAGGAGTCAGGAGCTTGCTGCTTTGATGAGACCCCTTTCAAGGATATGTTTGTAT
CAGCAACTTCTCACAGAAGCGACCCAGATTCTGCTTCACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021