Detail information of AT2G35410_circ_g.1


General Information
CircRNA Name AT2G35410_circ_g.1
ID in PlantcircBase ath_circ_016588
Alias NA
Organism Arabidpsis thaliana
Position chr2: 14899050-14899352  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G35410
Parent gene annotation Putative chloroplast RNA binding protein
Parent gene strand +
Alternative splicing AT2G35410_circ_g.2
Support reads 47
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G35410.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTTTCGCTGACCCCGAAGGTAGATCTTCTGGCTATGGCTTTGTCTCATTTGCTACTAGAGAA
GAAGCTGAGAATGCAATCACAAAACTCAATGGGAAGcaagtgtcagggaggatcattagcgtaa
gctttgcaagaaggttcaagaagcctactccgaaatcaccgaacgatcttccttctcctgcccc
tggagaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGTGTCAGGGAGGATCATTAGCGTAAGCTTTGCAAGAAGGTTCAAGAAGCCTACTCCGAAAT
CACCGAACGATCTTCCTTCTCCTGCCCCTGGAGACACTCGTCACAAACTCTACGTATCTAATCT
CGCTTGGAAAGCAAGATCAACACATCTCCGAGAGCTTTTCACTGCTGCAGATTTCAACCCGGTC
TCAGCTCGGGTTGTTTTCGCTGACCCCGAAGGTAGATCTTCTGGCTATGGCTTTGTCTCATTTG
CTACTAGAGAAGAAGCTGAGAATGCAATCACAAAACTCAATGGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.165964301
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017