Detail information of BGIOSGA018896_circ_g.4


General Information
CircRNA Name BGIOSGA018896_circ_g.4
ID in PlantcircBase osi_circ_005928
Alias 5:1638061|1638263
Organism Oryza sativa ssp. indica
Position chr5: 1638061-1638263  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA018896
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA018896_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA018896-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAGAAACAGGACATGCATCTATCTCCACTTTAGGACATGACTGTGCACTACAGATAGCTGAA
TCCATCTCAGCAATACAGGCTCCATCTGTACCACTCcttcctcgacatttatgtccacaacatc
aggcatgtttgatttgtcagcttctggctgcctagaggcaatatcagaaagaggattatgacct
tgaatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCTCGACATTTATGTCCACAACATCAGGCATGTTTGATTTGTCAGCTTCTGGCTGCCTAGA
GGCAATATCAGAAAGAGGATTATGACCTTGAATTTCTCCATCAGAAACAGGACATGCATCTATC
TCCACTTTAGGACATGACTGTGCACTACAGATAGCTGAATCCATCTCAGCAATACAGGCTCCAT
CTGTACCACTC
Conservation Information
Conserved circRNAs osa_circ_026406*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021